LOCUS BC080644 1942 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens collagen, type IV, alpha 2, mRNA (cDNA clone
IMAGE:5424128), partial cds.
ACCESSION BC080644
VERSION BC080644.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1942)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1942)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: f Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1942
/db_xref="H-InvDB:HIT000265906"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5424128"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1942
/gene="COL4A2"
/gene_synonym="FLJ22259"
/db_xref="GeneID:1284"
/db_xref="MIM:120090"
CDS <1..1091
/gene="COL4A2"
/gene_synonym="FLJ22259"
/codon_start=3
/product="COL4A2 protein"
/protein_id="AAH80644.1"
/db_xref="GeneID:1284"
/db_xref="MIM:120090"
/translation="EQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGIAGIP
QKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQGRGGVSAVPGFR
GDEGPIGHQGPIGQEGAPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCPVGMNK
LWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLS
TTAPLPMMPVAEDEIKPYISRCSVCEAPAIAIAVHSQDVSIPHCPAGWRSLWIGYSFL
MHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIPEQSF
QGSPSADTLKAGLIRTHISRCQVCMKNL"
BASE COUNT 436 a 605 c 541 g 360 t
ORIGIN
1 gtgaacaagg cttcatgggg aacactggac ccaccggggc agtgggcgac agaggcccca
61 agggacccaa gggagaccca ggattccctg gtgcccccgg gactgtggga gcccccggga
121 ttgcaggaat cccccagaag attgccgtcc aaccagggac agtgggtccc caggggaggc
181 gaggcccccc tggggcaccg ggggagatgg ggccccaggg cccccccgga gaaccaggtt
241 ttcgtggggc tccagggaaa gctgggcccc aaggaagagg tggtgtgtct gctgttcccg
301 gcttccgggg agatgaagga cccataggcc accaggggcc gattggccaa gaaggtgcac
361 caggccgtcc agggagcccg ggcctgccgg gtatgccagg ccgcagcgtc agcatcggct
421 acctcctggt gaagcacagc cagacggacc aggagcccat gtgcccggtg ggcatgaaca
481 aactctggag tggatacagc ctgctgtact tcgagggcca ggagaaggcg cacaaccagg
541 acctggggct ggcgggctcc tgcctggcgc ggttcagcac catgcccttc ctgtactgca
601 accctggtga tgtctgctac tatgccagcc ggaacgacaa gtcctactgg ctctctacca
661 ctgcgccgct gcccatgatg cccgtggccg aggacgagat caagccctac atcagccgct
721 gttctgtgtg tgaggccccg gccatcgcca tcgcggtcca cagtcaggat gtctccatcc
781 cacactgccc agctgggtgg cggagtttgt ggatcggata ttccttcctc atgcacacgg
841 cggcgggaga cgaaggcggt ggccaatcac tggtgtcacc gggcagctgt ctagaggact
901 tccgcgccac accattcatc gaatgcaatg gaggccgcgg cacctgccac tactacgcca
961 acaagtacag cttctggctg accaccattc ccgagcagag cttccagggc tcgccctccg
1021 ccgacacgct caaggccggc ctcatccgca cacacatcag ccgctgccag gtgtgcatga
1081 agaacctgtg agccggcgcg tgccaggaag ggccattttg gtgcttattc ttaacttatt
1141 acctcaggtg ccaacccaaa aattggcttt atttttttct taaaaaaaaa agtctaccaa
1201 aggaatttgc atccagcagc agcacttaga cctgccagcc actgtcaccg agcgggtgca
1261 agcactcggg gtccctggag ggcaagccct gcccacagaa agccaggagc agccctggcc
1321 cccatcagcc ctgctagacg caccgcctga aggcacagct aaccacttcg cacacaccca
1381 tgtaaccact gcactttcca atgccacaga caactcacat tgttcaactc ccttctcggg
1441 gtgggacaga cgagacaaca gcacacaggc agccagccgt ggccagaggc tcgaggggct
1501 caggggctca ggcacccgtc cccacacgag ggccccgtgg gtgggcctgg ccctgctttc
1561 tacgccaatg ttatgccagc tccatgttct cccaaatacc gttgatgtga attattttaa
1621 aggcaaaacc gtgctcttta ttttagaaaa cactgataat cacactgcgg taggtcattc
1681 ttttgccaca tccctataga ccactgggtt tggcaaaact caggcagaag tggagaccct
1741 tctagacatc actgtcagcc ttgctacttg aaggtacacc ccatagggtc ggaggtgctg
1801 tccccactgc cccacgttgt ccctgagatt taacccctcc actgctgggg gtgagctgta
1861 ctcttctgac tgccccctcc tgtgtaacga ctacaaaata aaacttggtt ctgaatattt
1921 ttaaaaaaaa aaaaaaaaaa aa
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