LOCUS BC080643 1171 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens BCL2/adenovirus E1B 19kDa interacting protein 3, mRNA
(cDNA clone IMAGE:4592001), partial cds.
ACCESSION BC080643
VERSION BC080643.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1171)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1171)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7669480.
FEATURES Location/Qualifiers
source 1..1171
/db_xref="H-InvDB:HIT000265905"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4592001"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1171
/gene="BNIP3"
/gene_synonym="NIP3"
/db_xref="GeneID:664"
/db_xref="MIM:603293"
CDS <1..687
/gene="BNIP3"
/gene_synonym="NIP3"
/codon_start=1
/product="BNIP3 protein"
/protein_id="AAH80643.1"
/db_xref="GeneID:664"
/db_xref="MIM:603293"
/translation="LGRGAPTSAFPPPAAEAHPAARRGLRSPQLPSGAMSQNGAPGMQ
EESLQGSWVELHFSNNGNGGSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPP
RSQTPQDTNRASETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPEN
IPPKEFLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIG
RRLTTSTSTF"
BASE COUNT 369 a 248 c 258 g 296 t
ORIGIN
1 ctgggccgcg gcgctccgac ctccgctttc ccaccgcccg cagctgaagc acatcccgca
61 gcccggcgcg gactccgatc gccgcagttg ccctctggcg ccatgtcgca gaacggagcg
121 cccgggatgc aggaggagag cctgcagggc tcctgggtag aactgcactt cagcaataat
181 gggaacgggg gcagcgttcc agcctcggtt tctatttata atggagacat ggaaaaaata
241 ctgctggacg cacagcatga gtctggacgg agtagctcca agagctctca ctgtgacagc
301 ccacctcgct cgcagacacc acaagatacc aacagagctt ctgaaacaga tacccatagc
361 attggagaga aaaacagctc acagtctgag gaagatgata ttgaaagaag gaaagaagtt
421 gaaagcatct tgaagaaaaa ctcagattgg atatgggatt ggtcaagtcg gccggaaaat
481 attcccccca aggagttcct ctttaaacac ccgaagcgca cggccaccct cagcatgagg
541 aacacgagcg tcatgaagaa agggggcata ttctctgcag aatttctgaa agttttcctt
601 ccatctctgc tgctctctca tttgctggcc atcggattgg ggatctatat tggaaggcgt
661 ctgacaacct ccaccagcac cttttgatga agaactggag tctgacttgg ttcgttagtg
721 gattacttct gagcttgcaa catagctcac tgaagagctg ttagatcctg gggtggccac
781 gtcacttgtg tttatttgtt ctgtaaatgc tgcgttccta atttagtaaa ataaaagaat
841 agacactaaa atcatgttga tctataatta cacctatggg atcaataagc atgtcagact
901 gattaatgtc tactgtgaaa atttggtagt aaattttcat ttgatattag atataaatat
961 ctgaatataa ataattttaa tatactagtc atgatgtgtg ttgtatttta aaaattatct
1021 gcaaccttaa ttcagctgaa gtactttata tttcaaaaga atgaataaca ttgataataa
1081 aatcgctact ttaaggggtt tgtccaaaat aaatattgtg gccttatata tcaaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//