LOCUS BC080617 961 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
(Arabidopsis), mRNA (cDNA clone MGC:99545 IMAGE:6252628), complete
cds.
ACCESSION BC080617
VERSION BC080617.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 961)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 961)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: i Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40805828.
FEATURES Location/Qualifiers
source 1..961
/db_xref="H-InvDB:HIT000265882"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99545 IMAGE:6252628"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..961
/gene="COPS8"
/gene_synonym="COP9"
/gene_synonym="CSN8"
/gene_synonym="MGC1297"
/gene_synonym="SGN8"
/db_xref="GeneID:10920"
/db_xref="HGNC:HGNC:24335"
CDS 21..650
/gene="COPS8"
/gene_synonym="COP9"
/gene_synonym="CSN8"
/gene_synonym="MGC1297"
/gene_synonym="SGN8"
/codon_start=1
/product="COP9 constitutive photomorphogenic homolog
subunit 8 (Arabidopsis)"
/protein_id="AAH80617.1"
/db_xref="GeneID:10920"
/db_xref="HGNC:HGNC:24335"
/translation="MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALY
LLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETV
QPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTR
MVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN"
BASE COUNT 289 a 195 c 206 g 271 t
ORIGIN
1 cggcgaggcc ggccgcgaag atgccagtgg cggtgatggc ggaaagcgcc tttagtttca
61 aaaagttgct ggatcagtgc gagaaccagg agctcgaggc ccctggagga attgctacac
121 ccccagtgta tggtcagctt ctagctttat atttgctcca taatgacatg aataatgcaa
181 gatatctttg gaaaagaata ccacctgcta taaaatctgc aaattctgaa cttgggggaa
241 tttggtcagt aggacaaaga atctggcaga gagatttccc tgggatctat acaaccatca
301 acgctcacca gtggtctgag acggtccagc caattatgga agcacttaga gatgcaacaa
361 ggagacgcgc ctttgccctg gtctctcaag cgtatacttc aatcatcgcc gatgattttg
421 cagcctttgt tggacttcct gtagaagagg ctgtgaaagg catattagaa caaggatggc
481 aagctgattc caccacaaga atggttctgc ccagaaagcc agttgcaggg gccctggatg
541 tttcctttaa caagtttatt cccttatcag agcctgctcc agttccccca atacccaatg
601 aacagcagtt agccagactg acggattatg tggctttcct tgaaaactga tttatcactc
661 tgagttcaag attcatcttc agaatcctgt atactgacaa acgtagaaat gtaaagtttg
721 tattttcaat ttattggatg gcttaagcac ctcagcattc cttactatgt gataaaatac
781 atatagaata taagatatac tatatacatt ttgtccataa acgttatgct gaatagttgt
841 tgaaacagtt ctcattttgt agtatttaat aatctggatg gagcctgtca gtattacagt
901 tagttttcta gtgactcata aaataagatt tcctgtttca tgtaaaaaaa aaaaaaaaaa
961 a
//