LOCUS BC080521 886 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens forkhead box P1, mRNA (cDNA clone IMAGE:3537750),
complete cds.
ACCESSION BC080521
VERSION BC080521.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 886)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 886)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: a Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 60498986
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..886
/db_xref="H-InvDB:HIT000265792"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3537750"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..886
/gene="FOXP1"
/gene_synonym="12CC4"
/gene_synonym="hFKH1B"
/gene_synonym="HSPC215"
/gene_synonym="MGC12942"
/gene_synonym="QRF1"
/db_xref="GeneID:27086"
/db_xref="HGNC:HGNC:3823"
/db_xref="MIM:605515"
CDS 477..821
/gene="FOXP1"
/gene_synonym="12CC4"
/gene_synonym="hFKH1B"
/gene_synonym="HSPC215"
/gene_synonym="MGC12942"
/gene_synonym="QRF1"
/codon_start=1
/product="forkhead box P1"
/protein_id="AAH80521.1"
/db_xref="GeneID:27086"
/db_xref="HGNC:HGNC:3823"
/db_xref="MIM:605515"
/translation="MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAV
DIGAADLAHAQQQQQQWHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKM
SGPVCQPNPSPF"
BASE COUNT 231 a 219 c 257 g 179 t
ORIGIN
1 gctcgggggg ccgctggagt gcccagcggg aacccgaaag tttgtaagag gaagagagcg
61 cgcggcgagc gagcgagcgg gccgggggca gcggcagcgg cgccggggac catggtgctg
121 ccggcgcctc ctccgcgggc gtgaaggcgg cgctcctact ccctccccgg actccgcggt
181 gtcccagaag cttttgttga caattccagt ttccgaacaa aacatttcgg caatggtgag
241 ggcttcgatc ccttctctga tttgctgtca gccatgaacg gatggatgtg atgcctgcta
301 gccaaaaggc ttccctctgt gtgttgcagt cctgtggcat tatgcatgcc ccctcccagt
361 gaccccaggc tttttatggc tgtgagacac gttaaaattt caggggtaag acgtgacctt
421 ttgaggtgac tataactgaa gattgcttta cagaagccaa aaaaggtttt tgagtcatga
481 tgcaagaatc tgggactgag acaaaaagta acggttcagc catccagaat gggtcgggcg
541 gcagcaacca cttactagag tgcggcggtc ttcgggaggg gcggtccaac ggagagacgc
601 cggccgtgga catcggggca gctgacctcg cccacgccca gcagcagcag caacagtggc
661 atctcataaa ccatcagccc tctaggagtc ccagcagttg gcttaagaga ctaatttcaa
721 gcccttggga gttggaagtc ctgcaggtcc ccttgtgggg agcagttgct gagacgaaga
781 tgagtggacc tgtgtgtcag cctaaccctt ccccattttg aataaaatta ttctttggag
841 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//