LOCUS BC078143 1889 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens C-type lectin domain family 18, member A, mRNA (cDNA
clone MGC:87728 IMAGE:5761001), complete cds.
ACCESSION BC078143
VERSION BC078143.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1889)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1889)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: d Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58866047.
FEATURES Location/Qualifiers
source 1..1889
/db_xref="H-InvDB:HIT000265702"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87728 IMAGE:5761001"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1889
/gene="CLEC18A"
/gene_synonym="MRCL"
/gene_synonym="MRCL1"
/db_xref="GeneID:348174"
/db_xref="HGNC:HGNC:30388"
CDS 121..1461
/gene="CLEC18A"
/gene_synonym="MRCL"
/gene_synonym="MRCL1"
/codon_start=1
/product="C-type lectin domain family 18, member A"
/protein_id="AAH78143.1"
/db_xref="GeneID:348174"
/db_xref="HGNC:HGNC:30388"
/translation="MLHPETSPGRGHLLAVLLALLGTAWAEVWPPQLQEQAPMAGALN
RKESFLLLSLHNRLRSWVQPPAADMRRLDWSDSLAQLAQARAALCGTPTPSLASGLWR
TLQVGWNMQLLPAGLVSFVEVVSLWFAEGQRYSHAAGECARNATCTHYTQLVWATSSQ
LGCGRHLCSAGQAAIEAFVCAYSPRGNWEVNGKTIVPYKKGAWCSLCTASVSGCFKAW
DHAGGLCEVPRNPCRMSCQNHGRLNISTCHCHCPPGYTGRYCQVRCSLQCVHGRLREE
ECSCVCDIGYGGAQCATKVHFPFHTCDLRIDGDCFMVSSEADTYYRARMKCQRKGGVL
AQIKSQKVQDILAFYLGRLETTNEVIDSDFETRNFWIGLTYKTAKDSFRWATGEHQAF
TSFAFGQPDNHGFGNCVELQASAAFNWNNQRCKTRNRYICQFAQEHISRWGPGS"
BASE COUNT 425 a 563 c 563 g 338 t
ORIGIN
1 ttttcctcgt gcagcccagc ctgactcctg gagattgtga atagctccat ccagcctgag
61 aaacaagccg ggtggctgag ccaggctgtg cacggagcgc ctgacgggcc caacagaccc
121 atgctgcatc cagagacctc ccctggccgg gggcatctcc tggctgtgct cctggccctc
181 cttggcaccg cctgggcaga ggtgtggcca ccccagctgc aggagcaggc tccgatggcc
241 ggagccctga acaggaagga gagtttcttg ctcctctccc tgcacaaccg cctgcgcagc
301 tgggtccagc cccctgcggc tgacatgcgg aggctggact ggagtgacag cctggcccag
361 ctggctcaag ccagggcagc cctctgtgga accccaaccc cgagcctggc gtccggcctg
421 tggcgcaccc tgcaagtggg ctggaacatg cagctgctac ccgcgggctt ggtgtccttt
481 gtcgaagtgg tcagcctatg gtttgcagag gggcagcggt acagccacgc ggcaggagag
541 tgtgctcgca acgccacctg cacccactac acgcagctcg tgtgggccac ctcaagccag
601 ctgggctgtg ggcggcacct gtgctctgca ggccaggcag cgatagaagc ctttgtctgt
661 gcctactccc ccagaggcaa ctgggaggtc aacgggaaga caatcgtccc ctataagaag
721 ggtgcctggt gttcgctctg cacagccagt gtctcaggct gcttcaaagc ctgggaccat
781 gcaggggggc tctgtgaggt ccccaggaat ccttgtcgca tgagctgcca gaaccatgga
841 cgtctcaaca tcagcacctg ccactgccac tgtccccctg gctacacggg cagatactgc
901 caagtgaggt gcagcctgca gtgtgtgcac ggccggctcc gggaggagga gtgctcgtgc
961 gtctgtgaca tcggctacgg gggagcccag tgtgccacca aggtgcattt tcccttccac
1021 acctgtgacc tgaggatcga cggagactgc ttcatggtgt cttcagaggc agacacctat
1081 tacagagcca ggatgaaatg tcagaggaaa ggcggggtgc tggcccagat caagagccag
1141 aaagtgcagg acatcctcgc cttctatctg ggccgcctgg agaccaccaa cgaggtgatt
1201 gacagtgact tcgagaccag gaacttctgg atcgggctca cctacaagac cgccaaggac
1261 tccttccgct gggccacagg ggagcaccag gccttcacca gttttgcctt tgggcagcct
1321 gacaaccacg ggtttggcaa ctgcgtggag ctgcaggctt cagctgcctt caactggaac
1381 aaccagcgct gcaaaacccg aaaccgttac atctgccagt ttgcccagga gcacatctcc
1441 cggtggggcc cagggtcctg aggcctgacc acatggctcc ctcgcctgcc ctgggagcac
1501 cggctctgct tacctgtccg cccacctgtc tggaacaagg gccaggttaa gaccacatgc
1561 ctcatgtcca aagaggtctc agaccttgca caatgccaga agttgggcag agagaggcag
1621 ggaggccagt gagggccagg gagtgagtgt tagaagaagc tggggccctt cgcctgcttt
1681 tgattgggaa gatgggcttc aattagatgg caaaggagag gacaccgcca gtggtccaaa
1741 aaggctgctc tcttccacct ggcccagacc ctgtggggca gcggagcttc cctgtggcat
1801 gaaccccaca gggtattaaa ttatgaatca gctgaaaaaa aaaaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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