LOCUS BC073971 1715 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SRY (sex determining region Y)-box 18, mRNA (cDNA
clone MGC:87946 IMAGE:6183010), complete cds.
ACCESSION BC073971
VERSION BC073971.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1715)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1715)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: m Column: 6.
FEATURES Location/Qualifiers
source 1..1715
/db_xref="H-InvDB:HIT000265192"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87946 IMAGE:6183010"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1715
/gene="SOX18"
/gene_synonym="HLTS"
/db_xref="GeneID:54345"
/db_xref="HGNC:HGNC:11194"
/db_xref="MIM:601618"
CDS 113..1267
/gene="SOX18"
/gene_synonym="HLTS"
/codon_start=1
/product="SRY (sex determining region Y)-box 18"
/protein_id="AAH73971.1"
/db_xref="GeneID:54345"
/db_xref="HGNC:HGNC:11194"
/db_xref="MIM:601618"
/translation="MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAA
PAAPASPPSPQRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKR
LAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKK
QARKARRLEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERS
PLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPA
APLAGLYYGTLGTPGPYPGPLSPPPEAPPLESAEPLGPAADLWADVDLTEFDQYLNCS
RTRPDAPGLPYHVALAKLGPRAMSCPEESSLISALSDASSAVYYSACISG"
BASE COUNT 259 a 682 c 522 g 252 t
ORIGIN
1 caccgccatc cgccctcccg gcctggcctg cccttgcgcc cggctcccca gtgcccgccg
61 cccgcccgcc gcgctcccgc gctccgttcc gcccaggccg cgcccagctg gaatgcagag
121 atcgccgccc ggctacggcg cacaggacga cccgcccgcc cgccgcgact gtgcatgggc
181 cccgggacac ggggccgccg ctgacacgcg cggcctcgcc gccggccccg ccgccctcgc
241 cgcgcccgcc gcgcccgcct cgccgcccag cccgcagcgc agtcccccgc gcagccccga
301 gccggggcgc tatggcctca gcccggccgg ccgcggggaa cgccaggcgg cagacgagtc
361 gcgcatccgg cggcccatga acgccttcat ggtgtgggca aaggacgagc gcaagcggct
421 ggctcagcag aacccggacc tgcacaacgc ggtgctcagc aagatgctgg gcaaagcgtg
481 gaaggagctg aacgcggcgg agaagcggcc cttcgtggag gaagccgaac ggctgcgcgt
541 gcagcacttg cgcgaccacc ccaactacaa gtaccggccg cgccgcaaga agcaggcgcg
601 caaggcccgg cggctggagc ccggcctcct gctcccggga ttagcgcccc cgcagccacc
661 gcccgagcct ttccccgcgg cgtctggctc ggctcgcgcc ttccgcgagc tgcccccgct
721 gggcgccgag ttcgacggcc tggggctgcc cacgcccgag cgctcgcctc tggacggcct
781 ggagcccggc gaggctgcct tcttcccacc gcccgcggcg cccgaggact gcgcgctgcg
841 gcccttccgc gcgccctacg cgcccaccga gttgtcgcgg gaccccggcg gttgctacgg
901 ggctcccctg gcggaggcgc tcaggaccgc gccccccgcg gcgccgctcg ctggcctgta
961 ctacggcacc ctgggcacgc ccggcccgta ccccggcccg ctgtcgccgc cgcccgaggc
1021 cccgccgctg gagagcgccg agccgctggg gcccgccgcc gatctgtggg ccgacgtgga
1081 cctcaccgag ttcgaccagt acctcaactg cagccggact cggcccgacg cccccgggct
1141 cccgtaccac gtggcactgg ccaaactggg cccgcgcgcc atgtcctgcc cagaggagag
1201 cagcctgatc tccgcgctgt cggacgccag cagcgcggtc tattacagcg cgtgcatctc
1261 cggctaggcc gccggcgccg cccgggtccc tgcagcgctt cctcccgcag cccccgcgac
1321 cgatccgacc gcgtcgctgc cgctctgctc tctcatacgc gtgtatgttt ggttccatgt
1381 cacagccccc taggagccag tgatgctcgg ccttgcgccc gttccacctc ccaggccacc
1441 cttcctgggc ttctgggcca cctgccctcg gggggcccct gcgagggtgc ctggagttcc
1501 cacgtgtccc ggggcttttc caggaagccc gagcccagga cctgttggca gagttgccag
1561 ggttacattt ttgaagcacc tgctcctttt cttgcagtgt attttctaca accagattgt
1621 attaatattt tttactttgc ccttttaaaa aatataccta atacaatata tttaattttt
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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