LOCUS BC073903 1910 bp mRNA linear HUM 03-AUG-2004
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 8, mRNA
(cDNA clone IMAGE:4415955), partial cds.
ACCESSION BC073903
VERSION BC073903.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1910)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1910)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: d Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1910
/db_xref="H-InvDB:HIT000265127"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4415955"
/tissue_type="Duodenum, adenocarcinoma"
/clone_lib="NIH_MGC_88"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1910
/gene="CHD8"
/gene_synonym="HELSNF1"
/gene_synonym="KIAA1564"
/db_xref="GeneID:57680"
CDS <1..1481
/gene="CHD8"
/gene_synonym="HELSNF1"
/gene_synonym="KIAA1564"
/codon_start=3
/product="CHD8 protein"
/protein_id="AAH73903.1"
/db_xref="GeneID:57680"
/translation="SSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNE
DGEQMTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGIL
GPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEK
EFTVQIKDEEGLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHL
DVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFLAYMEDRRKQKW
QRCKKNNKAELNCLGMEPVQTANSRNGKKGHHTETVFNRVLPGPIAPESSKKRARRMR
PDLSKMMALMQGGSTGSLSLHNTFQHSSSGLQSVSSLGHSSATSASLPFMPFVMGGAP
SSPHVDSSTMLHHHHHHPHPHHHHHHHPGLRAPGYPSSPVTTASGTTLRLPPLQPEED
DDEDEEDDDDLSQGYDSSERDFSLIDDPMMPANSDSSEDADD"
BASE COUNT 534 a 460 c 499 g 417 t
ORIGIN
1 ccagctccag ctccagcact gatgagagtg aggatgagaa ggaagagaag ctaactgacc
61 agtcccgctc aaagctctat gatgaagaga gtctcctgtc cctcactatg tcccaagatg
121 gattcccaaa tgaagatgga gaacaaatga cccctgagct tctgctactg caggaaagac
181 aaagagcctc tgagtggccc aaggatcgtg tcctgataaa ccgtattgac ctcgtctgcc
241 aggctgtact ctcagggaag tggccttcta gccgtaggag ccaggaaatg gtaacaggag
301 gaattttggg gccaggcaac cacttgctag acagtccctc attgactcct ggagaatatg
361 gtgactctcc agtccccaca ccacgaagta gtagtgcagc ttccatggca gaggaggaag
421 catctgcagt cagcacagcg gcagcccagt tcaccaaact tcgccgaggc atggatgaaa
481 aggagtttac agttcaaatc aaagatgagg aaggattgaa gttaacattc cagaagcaca
541 agttgatggc gaatggagta atgggagatg gacatccact gtttcataag aagaagggga
601 acagaaagaa gctagtagag ctggaggtgg agtgcatgga agagcctaat caccttgatg
661 tggacctgga gacccggatc cctgtcatca ataaggtgga tggtactttg ctggtgggtg
721 aggatgcccc tcgccgggct gaactggaga tgtggttaca gggtcatcca gagtttgctg
781 ttgatccccg atttctagcg tatatggagg atcgcagaaa acagaagtgg caaagatgta
841 aaaaaaataa taaggcagaa ttgaactgtt tgggaatgga accagtacag acagctaact
901 ctagaaatgg gaaaaagggt catcacactg aaacggtgtt caaccgggtt ttgccagggc
961 ctattgcacc agagagcagc aagaagcggg cccgtaggat gcgaccagac ctttctaaga
1021 tgatggccct catgcagggt ggaagcactg ggtctctatc tctgcataac acgttccaac
1081 acagcagtag tggcctacag tctgtgtcat ctttgggtca cagcagtgcc acttctgcat
1141 ctttgccttt tatgccattt gtgatgggtg gtgcaccatc atcccctcat gtagactcca
1201 gcaccatgct tcatcaccac caccaccacc cccaccccca ccatcaccac catcaccatc
1261 caggcttgag agcccctggc tacccctctt caccagtgac taccgcctct ggtactacct
1321 tgcggttgcc accactgcaa cctgaggagg atgacgatga ggatgaagaa gatgatgatg
1381 acttatctca gggctatgac agctcagaaa gggacttctc actcattgat gatcctatga
1441 tgccagctaa ctcagactcc agtgaagatg ctgatgactg aagccccagc atgggcccca
1501 ttgcttgggc ggctgctgta ttttcattta ctctggccct tggactatgg aaacgtggga
1561 ggggcagggg agatgtgggg aagtccagga ctccaggagg tgaaaaggaa aaaaaaaaaa
1621 aaatgtacct gattgctccc aattatgaga ggattgggtg ggcaggggaa ctcctaaaat
1681 aatacatgac cacttcctca tttctgggga aggaaaggag actagagcag ctggtgtgct
1741 cacccctccc tagtcacctc cattaaccac agactatgta gcgctggccc tagcctctgg
1801 cagagcctgt tcctggccga actgtggata cagctggagg gtcaggaact gttaccttct
1861 ttccccttgg cattaataaa tttaagttaa tccttaaaaa aaaaaaaaaa
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