LOCUS BC072672 1236 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high-mobility group nucleosome binding domain 1, mRNA
(cDNA clone MGC:87801 IMAGE:6166317), complete cds.
ACCESSION BC072672
VERSION BC072672.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1236)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1236)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: k Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255932.
FEATURES Location/Qualifiers
source 1..1236
/db_xref="H-InvDB:HIT000264911"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87801 IMAGE:6166317"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1236
/gene="HMGN1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
CDS 114..416
/gene="HMGN1"
/codon_start=1
/product="high-mobility group nucleosome binding domain 1"
/protein_id="AAH72672.1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
/translation="MPKRKVSSTEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDK
SSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD"
BASE COUNT 385 a 241 c 280 g 330 t
ORIGIN
1 ggcagcggca aggcagccca gtttcgcgaa ggctgtcggc gcgccgcggc ccgcaggcac
61 ccggcacgcg ccttccccgc aggcacccgg cacgcgcctt ccccgccgcc acgatgccca
121 agaggaaggt cagctccacc gaaggcgccg ccaaggaaga gcccaagagg agatcggcgc
181 ggttgtcagc taaacctcct gcaaaagtgg aagcgaagcc gaaaaaggca gcagcgaagg
241 ataaatcttc agacaaaaaa gtgcaaacaa aagggaaaag gggagcaaag ggaaaacagg
301 ccgaagtggc taaccaagaa actaaagaag acttacctgc ggaaaacggg gaaacgaaga
361 ctgaggagag tccagcctct gatgaagcag gagagaaaga agccaagtct gattaataac
421 catataccat gtcttatcag tggttcctgt ctcccttctt gtacaatcca gaggaatatt
481 tttatcaact attttgtaaa tgcaagtttt ttagtagctc tagaaacatt tttaagaagg
541 agggaatccc acctcatccc attttttaag tgtaaatgct tttttttaag aggtgaaatc
601 atttgctggt tgtttatttt ttggtacaac cagaaaatag tgtgggatat tgaattatgg
661 gaggctctga ctgtctcggg tgtcagctta acattccaca gatggggggt tagtttttat
721 atcctataat acaaagcata ttaaatggca atatggagtc agtcctgcat ttaatgtctt
781 gaacatttta aattacttct attaccatgt tgttttttag tagaattgtt tcctaaagaa
841 aaccactctt tgatcatggc tctctctgcc agaattgtgt gcactctgta acatctttgg
901 ttgtggtagt cctgttttcc taataacttt gttactgtgc tgtgaaagat tacagatttg
961 aacatgtagt gtacgtgcta ttgagttgtg aactggtggg ccgtatgtaa cagctgacca
1021 acgtgaagat actggtactt gatagcctct taaggaaaat ttgcttccaa attttaagct
1081 ggaaagtcac tggaataact ttaaaaaaga attacaatac atggcttttt agaatttcgt
1141 tacgtatgtt aagatttgtg tacaaattga aatgtctgta ctgatcctca accaataaaa
1201 tctcagttat gaaaaaaaaa aaaaaaaaaa aaaaaa
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