LOCUS BC072450 3296 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 10 (GalNAc-T10), mRNA (cDNA clone
IMAGE:6169361), partial cds.
ACCESSION BC072450
VERSION BC072450.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3296)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3296)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: k Column: 20.
FEATURES Location/Qualifiers
source 1..3296
/db_xref="H-InvDB:HIT000264894"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6169361"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3296
/gene="GALNT10"
/gene_synonym="DKFZp586H0623"
/gene_synonym="FLJ00205"
/gene_synonym="FLJ11715"
/gene_synonym="GalNAcT10"
/gene_synonym="pp-GalNAc-T10"
/db_xref="GeneID:55568"
/db_xref="MIM:608043"
CDS <1..1244
/gene="GALNT10"
/gene_synonym="DKFZp586H0623"
/gene_synonym="FLJ00205"
/gene_synonym="FLJ11715"
/gene_synonym="GalNAcT10"
/gene_synonym="pp-GalNAc-T10"
/codon_start=3
/product="GALNT10 protein"
/protein_id="AAH72450.1"
/db_xref="GeneID:55568"
/db_xref="MIM:608043"
/translation="HLKKPLEDYMALFPSVRILRTKKREGLIRTRMLGASVATGDVIT
FLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEM
YYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEIS
FKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYIYQR
RPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNV
GTGLCADTKHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCF
DAISHTSPVTLYDCHSMKGNQLWKYRKDKTLYHPVSGSCMDCSESDHRIFMNTCNPSS
LTQQWLFEHTNSTVLEKFNRN"
BASE COUNT 845 a 853 c 855 g 743 t
ORIGIN
1 agcacctgaa gaagcctctt gaagactaca tggccctttt ccccagtgtg aggattcttc
61 gaaccaagaa acgggaaggg ctgataagga cccgaatgct gggggcctca gtggcaactg
121 gggatgtcat cacattcttg gattcacact gtgaagccaa tgtcaactgg cttcccccct
181 tgcttgaccg cattgctcgg aaccgcaaga ccattgtgtg cccgatgatt gatgtaattg
241 accatgacga ctttcggtac gagacacagg caggggatgc catgcgggga gcctttgact
301 gggagatgta ctacaagcgg atcccgatcc ctccagaact gcagaaagct gaccccagcg
361 acccatttga gtctcccgtg atggccggtg gactgttcgc cgtggatcgg aagtggttct
421 gggaactcgg cgggtatgac ccaggcttgg agatctgggg aggggagcag tatgaaatct
481 ccttcaaggt gtggatgtgt gggggccgca tggaggacat cccctgctcc agggtgggcc
541 atatctacag gaagtatgtg ccctacaagg tcccggccgg agtcagcctg gcccggaacc
601 ttaagcgggt ggccgaagtg tggatggatg agtacgcaga gtacatttac cagcgccggc
661 ctgaataccg ccacctctcc gctggggatg tcgcagtcca gaaaaagctc cgcagctccc
721 ttaactgcaa gagtttcaag tggtttatga cgaagatagc ctgggacctg cccaaattct
781 acccacccgt ggagcccccg gctgcagctt ggggggagat ccgaaatgtg ggcacagggc
841 tgtgtgcaga cacaaagcac ggggccttgg gctccccact aaggctagag ggctgcgtcc
901 gaggccgtgg ggaggctgcc tggaacaaca tgcaggtatt caccttcacc tggagagagg
961 acatccggcc tggagacccc cagcacacca agaagttctg ctttgatgcc atttcccaca
1021 ccagccctgt cacgctgtac gactgccaca gcatgaaggg caaccagctg tggaaatacc
1081 gcaaagacaa gaccctgtac caccctgtca gtggcagctg catggactgc agtgaaagtg
1141 accataggat cttcatgaac acctgcaacc catcctctct cacccagcag tggctgtttg
1201 aacacaccaa ctcaacagtc ttggaaaaat tcaataggaa ctgagccctc atgtcccctt
1261 ggcaggcccc ccagggtctg gcactcactg cagacttcct ctttcaaggg aggcagggcc
1321 cctgtgggca ctaggtgtaa aaggtgctgg ccaaatggtt cagggtgaag agggctcttg
1381 attcaggggc tggggtctgc ctggtccttg agcccctgag ttgtgggggt agggtgaaga
1441 gcatatccca caagaggccc cacagggagc agagactgct ttaatccctg ctgacatcac
1501 ggaaaagcaa cagagccttt tcaactttgt cactatgtcc ccttgaacat tatgtgggag
1561 aacaccaagg tagcctaggc cacccaaaag tgagtcctgc gaggttgccc agccctcaga
1621 tggctctcct acatgatggt gctttagaaa caaaggtaaa atttgcctgt ttggggcagc
1681 ttttagtatc gatgccactc atctgcagca gaagagaaag aagtcctctt ggggcttttt
1741 agtttctgcc gtcctggggg gaacattgca gttactgcac agcttctgtt ctctgtcaca
1801 accccaggtg atttggtccg gtcaaaggcc atacttgggg ccctaagagt gttcagtatt
1861 gaatgctgat cagctgccag gtgaggagtc agaagaggga gcccccctag acatttcttt
1921 gcagctatgg acatgcggga tatctccccc tgctctctgg gtatttgaaa tgtcaatttt
1981 agcactctcc aggcacaagg acagcccagc accagcttta cagggcagtg tttcagatgg
2041 ccctgagccc acggaaaagg ccaggtagac ctccaaacta gaaatgctgg ctgatttgcc
2101 ctgatccatg cttccatttc cctgtctctc ttccccaggc aattactggc ctcaaaagag
2161 gaacagaggt gctgcgaggt gctcacctca cagagtctgg aggcctccag gatcaactgt
2221 gggcaaagtg cctgcctctg acctcatcat ggttctagtt ctcatacaga actccagaat
2281 ttttaaagaa ctctataatt ggattgcaaa ctaggatgct acataggatt ctggtattcc
2341 acatccaata tggatttcta gaatgctgtg attaaaggag ccagccaggt gtaatacagt
2401 caaggcagcc cccagcctag agacaatctg tgaaatccaa agttggtggt gttgggaaag
2461 cagggggaca tgtgtccctc agctcagcag aggctgtggt acaacatggt ccttggtgaa
2521 gacctgcacc cctggaacct cccaccatca tcacaactgt agtctcattt gcagtggaga
2581 aaagaacccg acgtcccaca gccagatata cacccagctc catgccagcc cttcatgttt
2641 accttttgct ttgttaatta catgtcagat tcctagaggg cctccagact aataggaagc
2701 atttctgtaa ccaacctgcc acccactgat tcagaaatgg aaatcacatt ccacaatcta
2761 tggcttccac cagctagccc aggaaatact tgaaatcagc attccaatta gtgttgagtc
2821 tcttgattgt gtcatttacc aattaaataa ctgagaccta agtctgggaa cagagccacg
2881 aatctgcctt tgagatgctg gcagatctca aggccatcaa ttattggggg agggagggac
2941 aaacactccc aatcatccac cagtcagact gaatgtgtag ctggcgagga attacttcca
3001 cttctggccc agcacaagcc ctgctttggc cacctgtctg caagagaggc ggcccctgtg
3061 cttgcaacgc ttacgtgttg atcccagtgt ccttttccaa atgagtgctg tagctttaga
3121 agtggccctc tatagaaaga agtcaaaaga tgaggcccct tctagaatct aggataacaa
3181 gagtgttgac agtttgagga gtcgaattga gattcatcat caaagagcaa tgcagcgtcg
3241 ttaaaataaa aactgtgcct tttaaaaaga aaaaaaaaaa aaaaaaaaaa aaaaaa
//