LOCUS BC072440 3025 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens SET domain containing 2, mRNA (cDNA clone
IMAGE:6045080), partial cds.
ACCESSION BC072440
VERSION BC072440.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3025)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3025)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30410776.
FEATURES Location/Qualifiers
source 1..3025
/db_xref="H-InvDB:HIT000264884"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6045080"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>3025
/gene="SETD2"
/gene_synonym="FLJ22472"
/gene_synonym="FLJ23184"
/gene_synonym="HIF-1"
/gene_synonym="HSPC069"
/gene_synonym="HYPB"
/gene_synonym="KIAA1732"
/db_xref="GeneID:29072"
/db_xref="HGNC:HGNC:18420"
CDS 351..>3025
/gene="SETD2"
/gene_synonym="FLJ22472"
/gene_synonym="FLJ23184"
/gene_synonym="HIF-1"
/gene_synonym="HSPC069"
/gene_synonym="HYPB"
/gene_synonym="KIAA1732"
/codon_start=1
/product="SETD2 protein"
/protein_id="AAH72440.1"
/db_xref="GeneID:29072"
/db_xref="HGNC:HGNC:18420"
/translation="MERRGKYSSKLERESKRTSENEAIKRCCSPPNELGFRRGSSYSK
HDSSASRYKSTLSKPIPKSDKFKNSFCCTELNEEIKQSHSFSLQTPCSKGSELRMINK
NPEREKAGSPAPSNRLNDSPTLKKLDELPIFKSEFITHDSHDSIKELDSLSKVKNDQL
RSFCPIELNINGSPGAESDLATFCTSKTDAVLMTSDDSVTGSELSPLVKACMLSSNGF
QNISRCKEKDLDDTCMLHKKSESPFRETEPLVSPHQDKLMSMPVMTVDYSKTVVKEPV
DTRVSCCKTKDSDIYCTLNDSNPSLCNSEAENIEPSVMKISSNSFMNVHLESKPVICD
SRNLTDHSKFACEEYKQSIGSTSSASVNHFDDLYQPIGSSGIASSLQSLPPGIKVDSL
TLLKCGENTSPVLDAVLKSKKSSEFLKHAGKETIVEVGSDLPDSGKGFASRENRRNNG
LSGKCLQEAQEEGNSILPERRGRPEISLDERGEGGHVHTSDDSEVVFSSCDLNLTMED
SDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSEDTDSDDSSIPRNRLQSV
VVVPKNSTLPMEETSPCSSRSSQSYRHYSDHWEDERLESRRHLYEEKFESIASKACPQ
TDKFFLHKGTEKNPEISFTQSSRKQIDNRLPELSHPQSDGVDSTSHTDVKSDPLGHPN
SEETVKAKIPSRQQEELPIYSSDFEDVPNKSWQQTTFQNRPDSRLGKTELSFSSSCEI
PHVDGLHSSEELRNLGWDFSQEKPSTTYQQPDSSYGACGGHKYQQNAEQYGGTRDYWQ
GNGYWDPRSGRPPGTGVVYDRTQGQVPDSLTDDREEEENWDQQDGSHFSDQSDKFLLS
LQKDKGSVQAPEISSNSIKDTLAVNEKKDFSKKKK"
BASE COUNT 1013 a 550 c 638 g 824 t
ORIGIN
1 ctcggtatgt atcttcccga tgtagatcag aaagagagcg acggcggagc agatctcact
61 ctaggtctga gagaggctct agaactaatt tatcctattc caggtcagaa cgatctcatt
121 attatgactc tgatcgtcgc taccatagga gctcccctta tcgagagagg acgcgctatt
181 ctcggccata cacagataac agagcacgag agagttctga ctcagaagaa tagtataaga
241 agacatactc aaggcgtacc tcatctcatt cctcttctta cagagaccta aggacatcat
301 cctattctaa atctgatcgg gactgtaaaa ctgagacctc ttacttagag atggaaagaa
361 gaggcaagta ttcttcaaaa ctagaaagag aatctaaaag gacttcagaa aatgaagcaa
421 ttaaaagatg ttgttctccc cctaatgaac tgggattccg acgagggtca tcatattcta
481 agcatgacag tagtgcttcc cgttataaat ctaccctttc aaaacctata cccaagtctg
541 ataaatttaa aaattctttc tgttgtacag aattaaatga agaaatcaaa cagtctcatt
601 cttttagttt acagacacct tgttcaaaag gtagtgaatt aagaatgatt aataaaaatc
661 ctgaaagaga aaaggctggg tctccagctc catcaaatcg attaaatgat tcacctactt
721 taaaaaagct agatgaattg cctattttta agtccgaatt tataacacat gatagccatg
781 atagtattaa ggaattagac tctttatcta aagtgaagaa tgatcaatta agaagttttt
841 gtcccataga attaaatata aatggatctc ctggggcaga atctgatttg gcaacatttt
901 gcacttctaa aactgatgct gttttaatga cttctgatga tagtgtgact ggatcggaat
961 tatccccttt ggtcaaagca tgcatgcttt catcaaatgg atttcagaat attagtaggt
1021 gcaaagaaaa agacttggat gatacctgca tgctgcataa gaagtcagaa agcccattta
1081 gagaaacaga acctctggtg tcaccacacc aagataaact catgtctatg ccagttatga
1141 ctgtggatta ttccaaaaca gtagttaaag aaccagttga tacgagggtt tcttgctgca
1201 aaaccaaaga ttcagacata tactgtactt tgaacgatag caacccttct ttgtgtaact
1261 ctgaagctga aaatattgag ccttcagtta tgaagatttc ttcaaatagc tttatgaatg
1321 tgcatttgga atcaaaacca gttatatgtg atagtagaaa tttgacagat cactcaaaat
1381 ttgcatgtga agaatataag cagagcatcg gtagcactag ttcagcttct gttaatcatt
1441 ttgatgattt atatcaacct attgggagtt caggtattgc ttcatctctt cagagtcttc
1501 caccaggaat aaaggtggac agtctaactc tcttgaaatg cggagagaac acatctccag
1561 ttctggatgc agtgctaaag agtaaaaaaa gttcagagtt tttaaagcat gcagggaaag
1621 aaacaatagt agaagtaggt agtgaccttc ctgattcagg aaagggattt gcttccaggg
1681 agaacaggcg taataatggg ttatctggga aatgtttgca agaggctcaa gaagaaggga
1741 attccatatt gcctgaaaga agaggaagac cagaaatctc tttagatgaa agaggagaag
1801 gaggacatgt gcatacttct gatgactcag aagttgtatt ttcttcttgt gatttgaatt
1861 taaccatgga agacagtgat ggtgtaactt atgcattaaa gtgtgacagt agtggtcatg
1921 ccccagaaat tgtgtctaca gttcatgaag attattctgg ctcttctgaa agttcaaatg
1981 atgaaagtga ttcagaagat acagattcgg atgatagcag tattccaaga aaccgtctcc
2041 agtctgttgt ggttgtgcca aagaattcta ctttgcccat ggaagaaaca agtccttgtt
2101 cttctcggag cagtcaaagt tatagacact attctgacca ttgggaagat gagagattgg
2161 agtcaaggag acatttgtat gaggaaaaat ttgaaagtat agcaagtaaa gcctgtcctc
2221 aaactgataa gtttttcctt cataaaggaa cagagaagaa tccggaaatt tcttttacac
2281 agtccagtag aaaacaaata gataaccgcc tgcctgaact ttctcatcct cagagtgatg
2341 gggttgatag tacaagtcat acagatgtga aatctgaccc tctgggtcac ccaaattcag
2401 aggaaaccgt gaaagccaaa ataccttcta ggcagcaaga agagctgcca atttattctt
2461 ctgattttga agatgtccca aataagtctt ggcaacagac cactttccaa aacaggccag
2521 atagtagact gggaaaaaca gaattgagtt tttcttcctc ttgtgagata ccacatgtgg
2581 atggcttgca ctcatcagaa gagctcagaa acttaggttg ggacttctct caagaaaagc
2641 cttctaccac gtatcagcaa cctgacagta gctatggagc ttgtggtgga cacaagtatc
2701 agcaaaatgc agaacagtat ggtgggacac gtgattactg gcaaggcaat ggttactggg
2761 atccaagatc aggtagacct cctggaactg gggttgtgta tgatcgaact caaggacaag
2821 taccagattc cctaacagat gatcgtgaag aagaggagaa ttgggatcaa caggatggat
2881 cccatttttc agaccagtcc gataaatttc ttctatccct tcagaaagac aaggggtcag
2941 tgcaagcacc tgaaataagc agcaattcca ttaaggacac tttagctgtg aatgaaaaga
3001 aagatttttc aaaaaaaaaa aaaaa
//