LOCUS BC072417 1866 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens EPH receptor A8, mRNA (cDNA clone IMAGE:6170274),
complete cds.
ACCESSION BC072417
VERSION BC072417.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1866)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1866)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: k Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55770891
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1866
/db_xref="H-InvDB:HIT000264862"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6170274"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1866
/gene="EPHA8"
/gene_synonym="HEK3"
/db_xref="GeneID:2046"
/db_xref="HGNC:HGNC:3391"
/db_xref="MIM:176945"
CDS 126..1613
/gene="EPHA8"
/gene_synonym="HEK3"
/codon_start=1
/product="EPH receptor A8"
/protein_id="AAH72417.2"
/db_xref="GeneID:2046"
/db_xref="HGNC:HGNC:3391"
/db_xref="MIM:176945"
/translation="MAPARGRLPPALWVVTAAAAAATCVSAARGEVNLLDTSTIHGDW
GWLTYPAHGWDSINEVDESFQPIHTYQVCNVMSPNQNNWLRTSWVPRDGARRVYAEIK
FTLRDCNSMPGVLGTCKETFNLYYLESDRDLGASTQESQFLKIDTIAADESFTGADLG
VRRLKLNTEVRSVGPLSKRGFYLAFQDIGACLAILSLRIYYKKCPAMVRNLAAFSEAV
TGADSSSLVEVRGQCVRHSEERDTPKMYCSAEGEWLVPIGKCVCSAGYEERRDACVAC
ELGFYKSAPGDQLCARCPPHSHSAAPAAQACHCDLSYYRAALDPPSSACTRPPSAPVN
LISSVNGTSVTLEWAPPLDPGGRSDITYNAVCRRCPWALSRCEACGSGTRFVPQQTSL
VQASLLVANLLAHMNYSFWIEAVNGVSDLSPEPRRAAVVNITTNQAGRRRNSVPQRPG
PPASPASDPSRDQSSAGDVLWAFRQVPLWPCAPHQDPELEALHCL"
BASE COUNT 350 a 625 c 567 g 324 t
ORIGIN
1 gcgccggggt gtgcgcccgg ccgggtgtgc ggagagcgag ggagcgcgct ccctcccgac
61 gcgcgggccg cagcggccaa gcccgagggt gcgtggcgcc cccgcccgcc cggcccggcc
121 cggccatggc ccccgcccgg ggccgcctgc cccctgcgct ctgggtcgtc acggccgcgg
181 cggcggcggc cacctgcgtg tccgcggcgc gcggcgaagt gaatttgctg gacacgtcga
241 ccatccacgg ggactggggc tggctcacgt atccggctca tgggtgggac tccatcaacg
301 aggtggacga gtccttccag cccatccaca cgtaccaggt ttgcaacgtc atgagcccca
361 accagaacaa ctggctgcgc acgagctggg tcccccgaga cggcgcccgg cgcgtctatg
421 ctgagatcaa gtttaccctg cgcgactgca acagcatgcc tggtgtgctg ggcacctgca
481 aggagacctt caacctctac tacctggagt cggaccgcga cctgggggcc agcacacaag
541 aaagccagtt cctcaaaatc gacaccattg cggccgacga gagcttcaca ggtgccgacc
601 ttggtgtgcg gcgtctcaag ctcaacacgg aggtgcgcag tgtgggtccc ctcagcaagc
661 gcggcttcta cctggccttc caggacatag gtgcctgcct ggccatcctc tctctccgca
721 tctactataa gaagtgccct gccatggtgc gcaatctggc tgccttctcg gaggcagtga
781 cgggggccga ctcgtcctca ctggtggagg tgaggggcca gtgcgtgcgg cactcagagg
841 agcgggacac acccaagatg tactgcagcg cggagggcga gtggctcgtg cccatcggca
901 aatgcgtgtg cagtgccggc tacgaggagc ggcgggatgc ctgtgtggcc tgtgagctgg
961 gcttctacaa gtcagcccct ggggaccagc tgtgtgcccg ctgccctccc cacagccact
1021 ccgcagctcc agccgcccaa gcctgccact gtgacctcag ctactaccgt gcagccctgg
1081 acccgccgtc ctcagcctgc acccggccac cctcggcacc agtgaacctg atctccagtg
1141 tgaatgggac atcagtgact ctggagtggg cccctcccct ggacccaggt ggccgcagtg
1201 acatcaccta caatgccgtg tgccgccgct gcccctgggc actgagccgc tgcgaggcat
1261 gtgggagcgg cacccgcttt gtgccccagc agacaagcct ggtgcaggcc agcctgctgg
1321 tggccaacct gctggcccac atgaactact ccttctggat cgaggccgtc aatggcgtgt
1381 ccgacctgag ccccgagccc cgccgggccg ctgtggtcaa catcaccacg aaccaggcag
1441 gtaggcggag aaactccgtc ccgcagcgtc ctggtccccc agcttcccct gcctcagacc
1501 catccaggga tcagagctct gccggggacg tgctgtgggc ctttaggcaa gtgcctctct
1561 ggccctgcgc tcctcaccag gacccagagc tggaggctct tcattgcctt tagaaaagtg
1621 gaacacattc tataagtaag agaaatccca aaagctcaga ggcaggctag tgtggccgtc
1681 gaaagcctag gttccagaac tttccctctc tgtgcctcag tttcctccct ggtgcaatgg
1741 gaataatagt acctgcctga ggtcctctca ggaggcttaa atgagaggaa tgaaattgct
1801 tagcccagca cctggcccgt ggtaaatgct caataaatgt cattaaaaaa taaaaaaaaa
1861 aaaaaa
//