LOCUS BC072014 922 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens Y box binding protein 1, mRNA (cDNA clone
IMAGE:5556363), partial cds.
ACCESSION BC072014
VERSION BC072014.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 922)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 922)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: h Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34098945.
FEATURES Location/Qualifiers
source 1..922
/db_xref="H-InvDB:HIT000264817"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5556363"
/tissue_type="Kidney, Wilm's tumor"
/clone_lib="NIH_MGC_108"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>922
/gene="YBX1"
/gene_synonym="BP-8"
/gene_synonym="CSDA2"
/gene_synonym="CSDB"
/gene_synonym="DBPB"
/gene_synonym="MDR-NF1"
/gene_synonym="NSEP-1"
/gene_synonym="YB-1"
/gene_synonym="YB1"
/db_xref="GeneID:4904"
/db_xref="MIM:154030"
CDS 124..>922
/gene="YBX1"
/gene_synonym="BP-8"
/gene_synonym="CSDA2"
/gene_synonym="CSDB"
/gene_synonym="DBPB"
/gene_synonym="MDR-NF1"
/gene_synonym="NSEP-1"
/gene_synonym="YB-1"
/gene_synonym="YB1"
/codon_start=1
/product="YBX1 protein"
/protein_id="AAH72014.1"
/db_xref="GeneID:4904"
/db_xref="MIM:154030"
/translation="MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTS
AAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS
VGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ
NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVM
EGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEKKKKK"
BASE COUNT 256 a 260 c 277 g 129 t
ORIGIN
1 ggagcggaga gcggacccca gagagccctg agcagcccca ccgccgccgc cggcctagtt
61 accatcacac cccgggagga gccgcagctg ccgcagccgg ccccagtcac catcaccgca
121 accatgagca gcgaggccga gacccagcag ccgcccgccg ccccccccgc cgcccccgcc
181 ctcagcgccg ccgacaccaa gcccggcact acgggcagcg gcgcagggag cggtggcccg
241 ggcggcctca catcggcggc gcctgccggc ggggacaaga aggtcatcgc aacgaaggtt
301 ttgggaacag taaaatggtt caatgtaagg aacggatatg gtttcatcaa caggaatgac
361 accaaggaag atgtatttgt acaccagact gccataaaga agaataaccc caggaagtac
421 cttcgcagtg taggagatgg agagactgtg gagtttgatg ttgttgaagg agaaaagggt
481 gcggaggcag caaatgttac aggtcctggt ggtgttccag ttcaaggcag taaatatgca
541 gcagaccgta accattatag acgctatcca cgtcgtaggg gtcctccacg caattaccag
601 caaaattacc agaatagtga gagtggggaa aagaacgagg gatcggagag tgctcccgaa
661 ggccaggccc aacaacgccg gccctaccgc aggcgaaggt tcccacctta ctacatgcgg
721 agaccctatg ggcgtcgacc acagtattcc aaccctcctg tgcagggaga agtgatggag
781 ggtgctgaca accagggtgc aggagaacaa ggtagaccag tgaggcagaa tatgtatcgg
841 ggatatagac cacgattccg caggggccct cctcgccaaa gacagcctag agaggacggc
901 aatgaaaaaa aaaaaaaaaa aa
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