LOCUS BC071944 1677 bp mRNA linear HUM 03-NOV-2006
DEFINITION Homo sapiens heterogeneous nuclear ribonucleoprotein D-like, mRNA
(cDNA clone MGC:88631 IMAGE:5015862), complete cds.
ACCESSION BC071944
VERSION BC071944.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1677)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1677)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: f Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14110410.
FEATURES Location/Qualifiers
source 1..1677
/db_xref="H-InvDB:HIT000264751"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88631 IMAGE:5015862"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1677
/gene="HNRPDL"
/gene_synonym="HNRNP"
/gene_synonym="JKTBP"
/gene_synonym="JKTBP2"
/gene_synonym="laAUF1"
/db_xref="GeneID:9987"
/db_xref="HGNC:HGNC:5037"
/db_xref="MIM:607137"
CDS 117..1379
/gene="HNRPDL"
/gene_synonym="HNRNP"
/gene_synonym="JKTBP"
/gene_synonym="JKTBP2"
/gene_synonym="laAUF1"
/codon_start=1
/product="heterogeneous nuclear ribonucleoprotein D-like"
/protein_id="AAH71944.1"
/db_xref="GeneID:9987"
/db_xref="HGNC:HGNC:5037"
/db_xref="MIM:607137"
/translation="MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPS
LAPSSARQGARRAQRHVTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAA
AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTS
KKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
DPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF
CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGG
TRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQG
YADYSGQQSTYGKASRGGGNHQNNYQPY"
BASE COUNT 475 a 385 c 416 g 401 t
ORIGIN
1 ctcgggactg ctgaccccag gaatttacgc cccttcgttt ttctcttctg attcttctct
61 tctcccaagc ccgcgtcccc tcacgcgtgg cctctctcct tgccgggagg gccgcgatgg
121 aggtcccgcc caggctttcc catgtgccgc cgccattgtt cccctccgct cccgctactt
181 tagcctcccg cagcctctcc cattggcggc cgcggccgcc gcggcagcta gccccgctcc
241 tcccttcgct cgctcccagc tccgcccggc agggggcgcg ccgggcccag cgccacgtca
301 ccgcccagca gccctcccga ttggcgggcg gggcggctat aaagggaggg cgcaggcggc
361 gcccggatct cttccgccgc cattttaaat ccagctccat acaacgctcc gccgccgctg
421 ctgccgcgac ccggactgcg cgccagcacc cccctgccga cagctccgtc actatggagg
481 atatgaacga gtacagcaat atagaggaat tcgcagaggg atccaagatc aacgcgagca
541 agaatcagca ggatgacggt aaaatgttta ttggaggctt gagctgggat acaagcaaaa
601 aagatctgac agagtacttg tctcgatttg gggaagttgt agactgcaca attaaaacag
661 atccagtcac tgggagatca agaggatttg gatttgtgct tttcaaagat gctgctagtg
721 ttgataaggt tttggaactg aaagaacaca aactggatgg caaattgata gatcccaaaa
781 gggccaaagc tttaaaaggg aaagaacctc ccaaaaaggt ttttgtgggt ggattgagcc
841 cggatacttc tgaagaacaa attaaagaat attttggagc ctttggagag attgaaaata
901 ttgaacttcc catggataca aaaacaaatg aaagaagagg attttgtttt atcacatata
961 ctgatgaaga gccagtaaaa aaattgttag aaagcagata ccatcaaatt ggttctggga
1021 agtgtgaaat caaagttgca caacccaaag aggtatatag gcagcaacag caacaacaaa
1081 aaggtggaag aggtgctgca gctggtggac gaggtggtac gaggggtcgt ggccgaggtc
1141 agggccaaaa ctggaaccaa ggatttaata actattatga tcaaggatat ggaaattaca
1201 atagtgccta tggtggtgat caaaactata gtggctatgg cggatatgat tatactgggt
1261 ataactatgg gaactatgga tatggacagg gatatgcaga ctacagtggc caacagagca
1321 cttatggcaa ggcatctcga gggggtggca atcaccaaaa caattaccag ccatactaaa
1381 ggagaacatt ggagaaaaca ggaggagatg ttaaagtaac ccatcttgca ggacgacatt
1441 gaagattggt cttctgttga tctaagatga ttattttgta aaagactttc tagtgtacaa
1501 gacaccattg tgtccaactg tatatagctg ccaattagtt ttctttgttt ttactttgtc
1561 ctttgctatc tgtgttatga ctcaatgtgg atttgtttat acacatttta tttgtatcat
1621 ttcatgttaa acctcaaata aatgcttcct tatgtgaaaa aaaaaaaaaa aaaaaaa
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