LOCUS BC071892 2425 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens prolyl 4-hydroxylase, beta polypeptide, mRNA (cDNA
clone MGC:88571 IMAGE:5443660), complete cds.
ACCESSION BC071892
VERSION BC071892.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2425)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2425)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: f Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070124.
FEATURES Location/Qualifiers
source 1..2425
/db_xref="H-InvDB:HIT000264703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88571 IMAGE:5443660"
/tissue_type="Skin, melanoma, amelanotic"
/clone_lib="NIH_MGC_41"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2425
/gene="P4HB"
/gene_synonym="DSI"
/gene_synonym="GIT"
/gene_synonym="P4Hbeta"
/gene_synonym="PDI"
/gene_synonym="PDIA1"
/gene_synonym="PHDB"
/gene_synonym="PO4HB"
/gene_synonym="PROHB"
/db_xref="GeneID:5034"
/db_xref="HGNC:HGNC:8548"
/db_xref="MIM:176790"
CDS 4..1530
/gene="P4HB"
/gene_synonym="DSI"
/gene_synonym="GIT"
/gene_synonym="P4Hbeta"
/gene_synonym="PDI"
/gene_synonym="PDIA1"
/gene_synonym="PHDB"
/gene_synonym="PO4HB"
/gene_synonym="PROHB"
/codon_start=1
/product="prolyl 4-hydroxylase, beta polypeptide"
/protein_id="AAH71892.1"
/db_xref="GeneID:5034"
/db_xref="HGNC:HGNC:8548"
/db_xref="MIM:176790"
/translation="MLRRALLCLAVAALVRADAPEEEDHVLVLRKSNFAEALAAHKYL
LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI
KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGF
FKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEG
EVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFK
TAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEEL
TAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEF
YAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASA
DRTVIDYNGERTLDGFKKFLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQKAVKDEL
"
BASE COUNT 581 a 658 c 690 g 496 t
ORIGIN
1 gacatgctgc gccgcgctct gctgtgcctg gccgtggccg ccctggtgcg cgccgacgcc
61 cccgaggagg aggaccacgt cctggtgctg cggaaaagca acttcgcgga ggcgctggcg
121 gcccacaagt acctgctggt ggagttctat gccccttggt gtggccactg caaggctctg
181 gcccctgagt atgccaaagc cgctgggaag ctgaaggcag aaggttccga gatcaggttg
241 gccaaggtgg acgccacgga ggagtctgac ctggcccagc agtacggcgt gcgcggctat
301 cccaccatca agttcttcag gaatggagac acggcttccc ccaaggaata tacagctggc
361 agagaggctg atgacatcgt gaactggctg aagaagcgca cgggcccggc tgccaccacc
421 ctgcctgacg gcgcagctgc agagtccttg gtggagtcca gcgaggtggc tgtcatcggc
481 ttcttcaagg acgtggagtc ggactctgcc aagcagtttt tgcaggcagc agaggccatc
541 gatgacatac catttgggat cacttccaac agtgacgtgt tctccaaata ccagctcgac
601 aaagatgggg ttgtcctctt taagaagttt gatgaaggcc ggaacaactt tgaaggggag
661 gtcaccaagg agaacctgct ggactttatc aaacacaacc agctgcccct tgtcatcgag
721 ttcaccgagc agacagcccc gaagattttt ggaggtgaaa tcaagactca catcctgctg
781 ttcttgccca agagtgtgtc tgactatgac ggcaaactga gcaacttcaa aacagcagcc
841 gagagcttca agggcaagat cctgttcatc ttcatcgaca gcgaccacac cgacaaccag
901 cgcatcctcg agttctttgg cctgaagaag gaagagtgcc cggccgtgcg cctcatcacc
961 ctggaggagg agatgaccaa gtacaagccc gaatcggagg agctgacggc agagaggatc
1021 acagagttct gccaccgctt cctggagggc aaaatcaagc cccacctgat gagccaggag
1081 ctgccggagg actgggacaa gcagcctgtc aaggtgcttg ttgggaagaa ctttgaagac
1141 gtggcttttg atgagaaaaa aaacgtcttt gtggagttct atgccccatg gtgtggtcac
1201 tgcaaacagt tggctcccat ttgggataaa ctgggagaga cgtacaagga ccatgagaac
1261 atcgtcatcg ccaagatgga ctcgactgcc aacgaggtgg aggccgtcaa agtgcacagc
1321 ttccccacac tcaagttctt tcctgccagt gccgacagga cggtcattga ttacaacggg
1381 gaacgcacgc tggatggttt taagaaattc ctggagagcg gtggccagga tggggcaggg
1441 gatgatgacg atctcgagga cctggaagaa gcagaggagc cagacatgga ggaagacgat
1501 gatcagaaag ctgtgaaaga tgaactgtaa tacgcaaagc cagacccggg cgctgccgag
1561 acccctcggg ggctgcacac ccagcagcag cgcacgcctc cgaagcctgc ggcctcgctt
1621 gaaggagggc gtcgccggaa acccagggaa cctctctgaa gtgacacctc acccctacac
1681 accgtccgtt cacccccgtc tcttccttct gcttttcggt ttttggaaag ggatccatct
1741 ccaggcagcc caccctggtg gggcttgttt cctgaaacca tgatgtactt tttcatacat
1801 gagtctgtcc agagtgcttg ctaccgtgtt cggagtctcg ctgcctccct cccgcgggag
1861 gtttctcctc tttttgaaaa ttccgtctgt gggattttta gacatttttc gacatcaggg
1921 tatttgttcc accttggcca ggcctcctcg gagaagcttg tcccccgtgt gggagggacg
1981 gagccggact ggacatggtc actcagtacc gcctgcagtg tcgccatgac tgatcatggc
2041 tcttgcattt ttgggtaaat ggagacttcc ggatcctgtc agggtgtccc ccatgcctgg
2101 aagaggagct ggtggctgcc agccctgggg cccggcacag gcctgggcct tccccttccc
2161 tcaagccagg gctcctcctc ctgtcgtggg ctcattgtga ccactggcct ctctacagca
2221 cggcctgtgg cctgttcaag gcagaaccac gacccttgac tcccgggtgg ggaggtggcc
2281 aaggatgctg gagctgaatc agacgctgac agttcttcag gcatttctat ttcacaatcg
2341 aattgaacac attggccaaa taaagttgaa attttaaaaa aaaaaaaaaa aaaataaaaa
2401 aaaaataaaa aaaaaaaaaa aaaaa
//