LOCUS BC071883 2768 bp mRNA linear HUM 25-JUN-2004
DEFINITION Homo sapiens tenascin XB, mRNA (cDNA clone IMAGE:6571962), partial
cds.
ACCESSION BC071883
VERSION BC071883.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2768)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2768)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20665033.
FEATURES Location/Qualifiers
source 1..2768
/db_xref="H-InvDB:HIT000264694_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6571962"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2768
/gene="TNXB"
/gene_synonym="HXBL"
/gene_synonym="TENX"
/gene_synonym="TNX"
/gene_synonym="TNXB1"
/gene_synonym="TNXB2"
/gene_synonym="TNXBS"
/gene_synonym="XB"
/gene_synonym="XBS"
/db_xref="GeneID:7148"
/db_xref="MIM:600985"
CDS <1..2562
/gene="TNXB"
/gene_synonym="HXBL"
/gene_synonym="TENX"
/gene_synonym="TNX"
/gene_synonym="TNXB1"
/gene_synonym="TNXB2"
/gene_synonym="TNXBS"
/gene_synonym="XB"
/gene_synonym="XBS"
/codon_start=1
/product="TNXB protein"
/protein_id="AAH71883.1"
/db_xref="GeneID:7148"
/db_xref="MIM:600985"
/translation="GGSRPVCLLKELSLGLHWRDHFPEPHTSGRLPGLRQRQHVTKSF
PSSLCTAPLEKELPPHLGELTVAEETSSSLRLSWTVAQGPFDSFVVQYRDTDGQPRAV
PVAADQRTVTVEDLEPGKKYKFLLYGLLGGKRLGPVSALGMTAPEEDTPAPELAPEAP
EPPEEPRLGVLTVTDTTPDSMRLSWSVAQGPFDSFVVQYEDTNGQPQALLVDGDQSKI
LISGLEPSTPYRFLLYGLHEGKRLGPLSAEGTTGLAPAGQTSEESRPRLSQLSVTDVT
TSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS
GTLYSLTLYGLRGPHKADSIQGTARTLSPVLESPRDLQFSEIRETSAKVNWMPPPSRA
DSFKVSYQLADGGEPQSVQVDGQARTQKLQGLIPGARYEVTVVSVRGFEESEPLTGFL
TTVPDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSAVDYP
LHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPRTALLTWTEPP
VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVST
SFTTGGLRIPFPRDCGEEMQNGAGASRTSTIFLNGNRERPLIVFCDMETDGGGWLVFQ
RRMDGQTDFWRDWEDYAHGFGNISGEFWLGNEALHSLTQAGDYSMRVDLRAGDEAVFA
QYDSFHVDSAAEYYRLHLEGYHGTAGDSMSYHSGSVFSARDRDPNSLLISCAVSYRGA
WWYRNCHYANLNGLYGSTVDHQGVSWYHWKGFEFSVPFTEMKLRPRNFRSPAGGG"
BASE COUNT 541 a 933 c 822 g 472 t
ORIGIN
1 ggcgggagca ggcctgtgtg tctcctcaag gagctgtccc tggggctaca ctggagggac
61 catttcccag aacctcacac ctccgggagg ctgccagggc ttaggcaaag gcagcatgtg
121 actaagagct ttccctcctc cctctgcaca gctcccctgg agaaggagct acctccccac
181 ctgggggaac tgaccgtggc tgaggagacc tccagctctc tgcgcctgtc ctggacggta
241 gcccagggcc cctttgactc cttcgtggtc cagtacaggg acacggacgg gcagcccagg
301 gcagtgcctg tggccgcaga ccagcgcaca gtcaccgtag aggacctgga gcctggcaag
361 aaatacaagt ttctgctcta cgggctcctt gggggaaagc gcctgggccc ggtctctgcc
421 ctgggaatga cagccccaga agaggacaca ccagccccag agttagcccc agaggcccct
481 gagcctcctg aagagccccg cctaggagtg ctgaccgtga ccgacacaac cccagactcc
541 atgcgcctct cgtggagcgt ggcccagggc ccctttgatt ccttcgtggt ccagtatgag
601 gacacgaacg ggcagcccca ggccttgctc gtggacggcg accagagcaa gatcctcatc
661 tcaggcctgg agcccagcac cccctacagg ttcctcctct atggcctcca tgaagggaaa
721 cgcctggggc ccctctcagc tgagggcacc acagggctgg ctcctgctgg tcagacctca
781 gaggagtcaa ggccccgcct gtcccagctg tctgtgactg acgtgaccac cagttcactg
841 aggctcaact gggaggcccc accgggggcc ttcgactcct tcctgctccg ctttggggtt
901 ccatcaccaa gcacactgga gccgcatccg cgtccactgc tgcagcgcga gctgatggtg
961 ccggggacgc ggcactcggc cgtgctccgg gacctgcgtt ccgggactct gtacagcctg
1021 acactgtatg ggctgcgagg accccacaag gccgacagca tccagggaac cgcccgcacc
1081 ctcagcccag ttctggagag cccccgtgac ctccaattca gtgaaatcag ggagacctca
1141 gccaaggtca actggatgcc cccaccatcc cgggcggaca gcttcaaagt ctcctaccag
1201 ctggcggacg gaggggagcc tcagagtgtg caggtggatg gccaggcccg gacccagaaa
1261 ctccaggggc tgatcccagg cgctcgctat gaggtgaccg tggtctcggt ccgaggcttt
1321 gaggagagtg agcctctcac aggcttcctc accacggttc ctgacggtcc cacacagttg
1381 cgtgcactga acttgaccga gggattcgcc gtgctgcact ggaagccccc ccagaatcct
1441 gtagacacct atgacatcca ggtcacagcc cctggggccc cgcctctgca ggcggagacc
1501 ccaggcagcg cggtggacta ccccctgcat gaccttgtcc tccacaccaa ctacaccgcc
1561 acagtgcgtg gcctgcgggg ccccaacctc acttccccag ccagcatcac cttcaccaca
1621 gggctagagg cccctcggga cttggaggcc aaggaagtga ccccccgcac cgccctgctc
1681 acttggactg agcccccagt ccggcccgca ggctacctgc tcagcttcca cacccctggt
1741 ggacagaccc aggagatcct gctcccagga gggatcacat ctcaccagct ccttggcctc
1801 tttccctcca cctcctacaa tgcacggctc caggccatgt ggggccagag cctcctgccg
1861 cccgtgtcca cctctttcac cacgggtggg ctgcggatcc ccttccccag ggactgcggg
1921 gaggagatgc agaacggagc cggtgcctcc aggaccagca ccatcttcct caacggcaac
1981 cgcgagcggc ccctgatcgt gttttgcgac atggagactg atgggggcgg ctggctggtg
2041 ttccagcgcc gcatggatgg acagacagac ttctggaggg actgggagga ctatgcccat
2101 ggttttggga acatctctgg agagttctgg ctgggcaatg aggccctgca cagcctgaca
2161 caggcaggtg actactccat gcgcgtggac ctgcgggctg gggacgaggc tgtgttcgcc
2221 cagtacgact ccttccacgt agactcggct gcggagtact accgcctcca cttggagggc
2281 taccacggca ccgcagggga ctccatgagc taccacagcg gcagtgtctt ctctgcccgt
2341 gatcgggacc ccaacagctt gctcatctcc tgcgctgtct cctaccgagg ggcctggtgg
2401 tacaggaact gccactacgc caacctcaac gggctctacg ggagcacagt ggaccatcag
2461 ggagtgagct ggtaccactg gaagggcttc gagttctcgg tgcccttcac ggaaatgaag
2521 ctgagaccaa gaaactttcg ctccccagcg gggggaggct gagctgctgc ccacctctct
2581 cgcaccccag tatgactgcc gagcactgag gggtcgcccc gagagaagag ccagggtcct
2641 tcaccaccca gccgctggag gaagccttct ctgccagcga tctcgcagca ctgtgtttac
2701 aggggggagg ggaggggttc gtacgggagc aataaaggag aaactgaggt aaaaaaaaaa
2761 aaaaaaaa
//