LOCUS BC071873 1171 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens spectrin repeat containing, nuclear envelope 2, mRNA
(cDNA clone IMAGE:5428650), complete cds.
ACCESSION BC071873
VERSION BC071873.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1171)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1171)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: f Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33624847
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1171
/db_xref="H-InvDB:HIT000264686"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5428650"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..1171
/gene="SYNE2"
/gene_synonym="DKFZP434H2235"
/gene_synonym="KIAA1011"
/gene_synonym="Nesprin-2"
/gene_synonym="NUA"
/gene_synonym="NUANCE"
/gene_synonym="SYNE-2"
/db_xref="GeneID:23224"
/db_xref="HGNC:HGNC:17084"
/db_xref="MIM:608442"
CDS 204..1061
/gene="SYNE2"
/gene_synonym="DKFZP434H2235"
/gene_synonym="KIAA1011"
/gene_synonym="Nesprin-2"
/gene_synonym="NUA"
/gene_synonym="NUANCE"
/gene_synonym="SYNE-2"
/codon_start=1
/product="SYNE2 protein"
/protein_id="AAH71873.1"
/db_xref="GeneID:23224"
/db_xref="HGNC:HGNC:17084"
/db_xref="MIM:608442"
/translation="MASSPELPTEDEQGSWGIDDLHISLQAEQEDTQKKAFTCWINSQ
LARHTSPSVISDLFTDIKKGHVLLDLLEVLSGQQLPRDKGSNTFQCRINIEHALTFLR
NRSIKLINIHVTDIIDGNPSIILGLIWTIILHFHIEKLAQTLSCNYNQPSLDDVSVVD
SSPASSPPAKKCSKVQARWQMSARKALLLWAQEQCATYESVNVTDFKSSWRNGMAFLA
IIHALRPDLIDMKSVKHRSNKDNLREAFRIAEQELKIPRLLEPEDAWRSSALYRIYMP
GTVSCASYL"
BASE COUNT 350 a 276 c 273 g 272 t
ORIGIN
1 cggagcgcgc tcagctgcgc ccagagcctt cggccggacc tgaaaaagcg agagggagag
61 cgagcaaaag gcgcgatcca gagagccagg caagcggggc gccgacctcg ggcggccccg
121 gcccgcgccc ttgcccctcg gccgggcgga cgttcacttc ttcaactgag atggacatga
181 tataatctcc attgagtcaa agaatggcat ctagtcctga gcttcccacc gaagatgaac
241 agggttcctg gggcatcgac gatctccata tttcattgca agctgaacag gaagacaccc
301 agaagaaagc cttcacgtgc tggataaact cacagttggc caggcacact tctccctcag
361 ttatatccga cctattcaca gacattaaaa aggggcatgt cctcctggat ctgctagaag
421 tactttctgg gcaacagttg cctcgggata aaggatctaa taccttccag tgtagaatca
481 atatagaaca tgccttgaca ttcctaagaa accgatcaat taagctaata aatattcatg
541 ttactgatat cattgatgga aacccatcca ttatccttgg cctaatttgg acaattatcc
601 tgcactttca tattgagaag cttgcccaga ctctttcttg caattacaat cagccttccc
661 tggatgatgt gagtgtggtt gactcatctc ctgcctcaag tcctccagct aagaaatgct
721 ctaaagtgca agcaagatgg caaatgtctg caagaaaggc ccttcttttg tgggctcagg
781 aacaatgcgc cacctatgag tctgtcaatg tgaccgattt taagtcaagt tggagaaatg
841 ggatggcttt tttggccatc attcatgcct tgcgaccaga cctaattgac atgaagagtg
901 tgaagcatag atccaacaaa gacaatctga gagaggcctt cagaattgca gaacaagaat
961 taaaaatccc cagattgctg gaaccagaag atgcctggag aagttctgca ctttacagaa
1021 tttatatgcc tggcacagtg tcttgtgcca gctacttgtg aggctgagat tggaggactg
1081 tttgaggcca ggagtttgag accagactgg acaacataga gagaccctgt ctaaaaaaaa
1141 taaaaaataa gataaaaaaa aaaaaaaaaa a
//