LOCUS BC071864 1887 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high mobility group AT-hook 1, mRNA (cDNA clone
MGC:88534 IMAGE:6083428), complete cds.
ACCESSION BC071864
VERSION BC071864.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1887)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1887)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: i Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22208972.
FEATURES Location/Qualifiers
source 1..1887
/db_xref="H-InvDB:HIT000264677"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88534 IMAGE:6083428"
/tissue_type="Pancreas, ductal carcinoma"
/clone_lib="NIH_MGC_110"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1887
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
CDS 198..521
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/codon_start=1
/product="high mobility group AT-hook 1"
/protein_id="AAH71864.1"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
/translation="MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGS
QKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQES
SEEEQ"
BASE COUNT 367 a 652 c 504 g 364 t
ORIGIN
1 ccggggctat ttctggcgct ggcgcggctc caagaaggca tccgcatttg ctaccagcgg
61 cggccgcggc ggagccaggc cggtcctcag cgcccagcac cgccgctccc ggcaacccgg
121 agcgcgcacc gcaggccggc ggccgagctc gcgcatccca gccatcactc ttccacctgc
181 tccttagaga agggaagatg agtgagtcga gctcgaagtc cagccagccc ttggcctcca
241 agcaggaaaa ggacggcact gagaagcggg gccggggcag gccgcgcaag cagcctccgg
301 tgagtcccgg gacagcgctg gtagggagtc agaaggagcc cagcgaagtg ccaacaccta
361 agagacctcg gggccgacca aagggaagca aaaacaaggg tgctgccaag acccggaaaa
421 ccaccacaac tccaggaagg aaaccaaggg gcagacccaa aaaactggag aaggaggaag
481 aggagggcat ctcgcaggag tcctcggagg aggagcagtg acccatgcgt gccgcctgct
541 cctcactgga ggagcagctt ccttctggga ctggacagct ttgctccgct cccaccgccc
601 ccgccccttc cccaggccca ccatcaccac cgcctctggc cgccaccccc atcttccacc
661 tgtgccctca ccaccacact acacagcaca ccagccgctg cagggctccc atgggctgag
721 tggggagcag ttttcccctg gcctcagttc ccagctcccc ccgcccaccc acgcatacac
781 acatgccctc ctggacaagg ctaacatccc acttagccgc accctgcacc tgctgcgtcc
841 ccactccctt ggtggtgggg acattgctct ctgggctttt ggtttggggg cgccctctct
901 gctccttcac tgttccctct ggcttcccat agtggggcct gggagggttc ccctggcctt
961 aaaaggggcc caagccccat ctcatcctgg cacgccctac tccactgccc tggcagcagc
1021 aggtgtggcc aatggagggg ggtgctggcc cccaggattc ccccagccaa actgtctttg
1081 tcaccacgtg gggctcactt ttcatccttc cccaacttcc ctagtccccg tactaggttg
1141 gacagccccc ttcggctaca ggaaggcagg aggggtgagt cccctactcc ctcttcactg
1201 tggccacagc ccccttgccc tccgcctggg atctgagtac atattgtggt gatggagatg
1261 cagtcactta ttgtccaggt gaggcccaag agccctgtgg ccgccacctg aggtgggctg
1321 gggctgctcc cctaacccta ctttgcttcc gccactcagc catttccccc tcctcagatg
1381 gggcaccaat aacaaggagc tcaccctgcc cgctcccaac ccccctcctg ctcctccctg
1441 ccccccaagg ttctggttcc atttttcctc tgttcacaaa ctacctctgg acagttgtgt
1501 tgttttttgt tcaatgttcc attcttcgac atccgtcatt gctgctgcta ccagcgccaa
1561 atgttcatcc tcattgcctc ctgttctgcc cacgatcccc tcccccaaga tactctttgt
1621 ggggaagagg ggctggggca tggcaggctg ggtgaccgac taccccagtc ccagggaagg
1681 tggggccctg cccctaggat gctgcagcag agtgagcaag ggggcccgaa tcgaccataa
1741 agggtgtagg ggccacctcc tccccctgtt ctgttgggga ggggtagcca tgatttgtcc
1801 cagcctgggg ctccctctct ggtttcctat ttgcagttac ttgaataaaa aaaatatcct
1861 tttctggaaa aaaaaaaaaa aaaaaaa
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