LOCUS BC071778 1830 bp mRNA linear HUM 15-JUN-2004
DEFINITION Homo sapiens nuclear receptor subfamily 1, group H, member 4, mRNA
(cDNA clone IMAGE:4606016), partial cds.
ACCESSION BC071778
VERSION BC071778.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1830)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1830)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: c Column: 20.
FEATURES Location/Qualifiers
source 1..1830
/db_xref="H-InvDB:HIT000264597"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4606016"
/tissue_type="Kidney"
/clone_lib="NIH_MGC_75"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..1830
/gene="NR1H4"
/gene_synonym="BAR"
/gene_synonym="FXR"
/gene_synonym="HRR-1"
/gene_synonym="HRR1"
/gene_synonym="RIP14"
/db_xref="GeneID:9971"
/db_xref="MIM:603826"
CDS <1..1429
/gene="NR1H4"
/gene_synonym="BAR"
/gene_synonym="FXR"
/gene_synonym="HRR-1"
/gene_synonym="HRR1"
/gene_synonym="RIP14"
/codon_start=2
/product="NR1H4 protein"
/protein_id="AAH71778.1"
/db_xref="GeneID:9971"
/db_xref="MIM:603826"
/translation="IQISPHCSCTPSGFFMEMMSMKPAKGVLTEQVAGPLGQNLEVEP
YSQYSNVQFPQVQPQISSSSYYSNLGFYPQQPEEWYSPGIYELRRMPAETLYQGETEV
AEMPVTKKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVY
KCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQH
ADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNKI
LKEELSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR
SAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIV
ILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHH
AEMLMSWRVNDHKFTPLLCEIWDVQ"
BASE COUNT 589 a 347 c 398 g 496 t
ORIGIN
1 aattcaaatt agtcctcact gcagctgtac gccgtcagga tttttcatgg aaatgatgag
61 tatgaagccc gcgaaaggtg ttttaacaga acaagtggca ggtcctctgg gacagaacct
121 ggaagtggaa ccatactcgc aatacagcaa tgttcagttt ccccaagttc aaccacagat
181 ttcctcgtca tcctattatt ccaacctggg tttctacccc cagcagcctg aagagtggta
241 ctctcctgga atatatgaac tcaggcgtat gccagctgag actctctacc agggagaaac
301 tgaggtagca gagatgcctg taacaaagaa gccccgcatg ggcgcgtcag cagggaggat
361 caaaggggat gagctgtgtg ttgtttgtgg agacagagcc tctggatacc actataatgc
421 actgacctgt gaggggtgta aaggtttctt caggagaagc attaccaaaa acgctgtgta
481 caagtgtaaa aacgggggca actgtgtgat ggatatgtac atgcgaagaa agtgtcaaga
541 gtgtcgacta aggaaatgca aagagatggg aatgttggct gaatgtatgt atacaggctt
601 gttaactgaa attcagtgta aatctaagcg actgagaaaa aatgtgaagc agcatgcaga
661 tcagaccgtg aatgaagaca gtgaaggtcg tgacttgcga caagtgacct cgacaacaaa
721 gtcatgcagg gagaaaactg aactcacccc agatcaacag actcttctac attttattat
781 ggattcatat aacaaacaga ggatgcctca ggaaataaca aataaaattt taaaagaaga
841 actcagtgca gaagaaaatt ttctcatttt gacggaaatg gcaaccaatc atgtacaggt
901 tcttgtagaa ttcacaaaaa agctaccagg atttcagact ttggaccatg aagaccagat
961 tgctttgctg aaagggtctg cggttgaagc tatgttcctt cgttcagctg agattttcaa
1021 taagaaactt ccgtctgggc attctgacct attggaagaa agaattcgaa atagtggtat
1081 ctctgatgaa tatataacac ctatgtttag tttttataaa agtattgggg aactgaaaat
1141 gactcaagag gagtatgctc tgcttacagc aattgttatc ctgtctccag atagacaata
1201 cataaaggat agagaggcag tagagaagct tcaggagcca cttcttgatg tgctacaaaa
1261 gttgtgtaag attcaccagc ctgaaaatcc tcaacacttt gcctgtctcc tgggtcgcct
1321 gactgaatta cggacattca atcatcacca cgctgagatg ctgatgtcat ggagagtaaa
1381 cgaccacaag tttaccccac ttctctgtga aatctgggac gtgcagtgat ggggattaca
1441 ggggaggggt ctagctcctt tttctctctc atattaatct gatgtataac tttcctttat
1501 ttcacttgta cccagtttca ctcaagaaat cttgatgaat atttatgttg taattacatg
1561 tgtaacttcc acaactgtaa atattgggct agatagaaca actttctcta cattgtgttt
1621 taaaaggctc cagggaatcc tgcattctaa ttggcaagcc ctgtttgcct aattaaattg
1681 attgttactt caattctatc tgttgaacta gggaaaatct cattttgctc atcttaccat
1741 attgcatata ttttattaaa gagttgtatt caatcttggc aataaagcaa acataatgac
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//