LOCUS BC071643 1225 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high-mobility group nucleosome binding domain 1, mRNA
(cDNA clone MGC:87800 IMAGE:5549431), complete cds.
ACCESSION BC071643
VERSION BC071643.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1225)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1225)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 166 Row: p Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255932.
FEATURES Location/Qualifiers
source 1..1225
/db_xref="H-InvDB:HIT000264470"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87800 IMAGE:5549431"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1225
/gene="HMGN1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
CDS 113..415
/gene="HMGN1"
/codon_start=1
/product="high-mobility group nucleosome binding domain 1"
/protein_id="AAH71643.1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
/translation="MPKRKVSSTEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDK
SSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD"
BASE COUNT 373 a 242 c 280 g 330 t
ORIGIN
1 cggacgcgtg ggcagcccag tttcgcgaag gctgtcggcg cgccgcggcc cgcaggcacc
61 cggcacgcgc cttccccgca ggcacccggc acgcgccttc cccgccgcca cgatgcccaa
121 gaggaaggtc agctccaccg aaggcgccgc caaggaagag cccaagagga gatcggcgcg
181 gttgtcagct aaacctcctg caaaagtgga agcgaagccg aaaaaggcag cagcgaagga
241 taaatcttca gacaaaaaag tgcaaacaaa agggaaaagg ggagcaaagg gaaaacaggc
301 cgaagtggct aaccaagaaa ctaaagaaga cttacctgcg gaaaacgggg aaacgaagac
361 tgaggagagt ccagcctctg atgaagcagg agagaaagaa gccaagtctg attaataacc
421 atataccatg tcttatcagt ggtccctgtc tcccttcttg tacaatccag aggaatattt
481 ttatcaacta ttttgtaaat gcaagttttt tagtagctct agaaacattt ttaagaagga
541 gggaatccca cctcatccca ttttttaagt gtaaatgctt ttttttaaga ggtgaaatca
601 tttgctggtt gtttattttt tggtacaacc agaaaatagt gtgggatatt gaattatggg
661 aggctctgac tgtctcgggt gtcagcttaa cattccacag atggggggtt agtttttata
721 tcctataata caaagcatat taaatggcaa tatggagtca gtcctgcatt taatgtcttg
781 aacattttaa attacttcta ttaccatgtt gttttttagt agaattgttt cctaaagaaa
841 accactcttt gatcatggct ctctctgcca gaattgtgtg cactctgtaa catctttggt
901 tgtggtagtc ctgttttcct aataactttg ttactgtgct gtgaaagatt acagatttga
961 acatgtagtg tacgtgctat tgagttgtga actggtgggc cgtatgtaac agctgaccaa
1021 cgtgaagata ctggtacttg atagcctctt aaggaaaatt tgcttccaaa ttttaagctg
1081 gaaagtcact ggaataactt taaaaaagaa ttacaataca tggcttttta gaatttcgtt
1141 acgtatgtta agatttgtgt acaaattgaa atgtctgtac tgatcctcaa ccaataaaat
1201 ctcagttatg aaaaaaaaaa aaaaa
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