LOCUS BC071609 5174 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens chromosome 1 open reading frame 96, mRNA (cDNA clone
MGC:87639 IMAGE:5264741), complete cds.
ACCESSION BC071609
VERSION BC071609.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5174)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5174)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: k Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48675821.
FEATURES Location/Qualifiers
source 1..5174
/db_xref="H-InvDB:HIT000264438"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87639 IMAGE:5264741"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5174
/gene="C1orf96"
/gene_synonym="FLJ41471"
/gene_synonym="RP4-803J11.3"
/db_xref="GeneID:126731"
/db_xref="HGNC:HGNC:29578"
CDS 125..937
/gene="C1orf96"
/gene_synonym="FLJ41471"
/gene_synonym="RP4-803J11.3"
/codon_start=1
/product="chromosome 1 open reading frame 96"
/protein_id="AAH71609.1"
/db_xref="GeneID:126731"
/db_xref="HGNC:HGNC:29578"
/translation="MSPGSGVKSEYMKRYQEPRWEEYGPCYGELLHYRLGRRLLEQAH
APWLWDDWGPAGSSEDSASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPE
EQDAEAGDAEAEDAEDAALPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFA
RGNRKAVKSPQRSSSKIKENKHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESAL
RAKNRRQVEKRKLVAQRQRAHSVDVEKNRKMKASSSENPWMTEYMRCYSARA"
BASE COUNT 1540 a 954 c 1091 g 1589 t
ORIGIN
1 gagtgcgctt tagctgctgc gccacgcgcg cctcgggcct gggcgcagag gatcggccgg
61 gcgcggcggg aaggaggctg cgggcagcga ggagcggctg gcgctcgagg cggcggacgg
121 caccatgtcc ccggggagcg gggtgaagag cgagtacatg aagcgctacc aggagccgcg
181 ctgggaggag tacgggccgt gctacggcga gctgctgcac taccgcctag gccgccggct
241 gctggagcag gcgcacgcgc cctggctctg ggacgactgg ggcccggccg gctcctcgga
301 ggactcggcg tcgtcagagt cgtcgggcgc cgggggcccc gcaccccggt gcgccccgcc
361 ctcgcccccg ccgcccgtag agccggcgac ccaggaggag gcggaacggc gggcgcgcgg
421 ggccccggag gagcaggacg cggaggccgg ggacgcggag gccgaggacg cggaggacgc
481 ggctctgcca gcactgccag tgaaagatgt agaagataaa cctgaacaac aaaccagaac
541 aagagagact gacaaatcac ccaccagtac tgagcctcga cagcaaccaa gtgccttatt
601 tgctagagga aacaggaaag cggtcaaaag tccccaaaga tcatcgagta aaataaaaga
661 aaacaagcat ccatttgctc tttatggctg gggagaaaaa cagaccgata caggaagcca
721 gaagactcac aacgtctgtg cgtccgctcc tgtgcatgag attcatgaat cagcattacg
781 agccaagaac agaagacagg tggaaaaaag gaaactggtt gctcaaaggc agcgagctca
841 ctctgtggat gtggagaaga acagaaagat gaaggcttcc tcctcagaga acccgtggat
901 gacagaatac atgaggtgct attcggcaag agcttaaaga aacacttgcg tggacagcct
961 cttttaaaaa gtgtaaatga ctgaaaggaa aaacaaaaca aaaaccatca aaagaaacgg
1021 acacaggttt aagaaaccaa ctgattatgc aaggtttttt ttagggaatt tgtaaaagat
1081 tgttttattt tgatgaatat tggtcaccta cctcggcagt agggcagaca gttgaagcca
1141 tagacatttg gttatttatg aagataattc cctaaatctt tgatattctt ataaggtttt
1201 tgttttaaag catcttaatc ttttaagata ctgacaccaa atgcctttaa atggcaacag
1261 atgcttacag ttcagtattc ttttcataag cttaggtaga gcctattatc atcttgttct
1321 aaataacttt ccagattcca tagctataag atcattccat cctacagcat aagactcgtt
1381 ttccttatat gccgttttgt ttgtgaaaga atatcaagtc aaaaatgagt gtcagcacta
1441 ctactgattc catgtataat gaaagtagaa ctttgctagt tcctgaaaat ttttaactta
1501 tttgtatttc agttcagcag catctttatg tagattgtga tatttaagaa ttatctgggc
1561 tgggcgaggg tctctttttc tctttcagtg atcatctagg cagttattat ttaatagttt
1621 aatagctcaa gtacattcca atagacgaag tgcacacaac acaatatgtg tgtacagtag
1681 tagtaaagtt tcttttgagt agtcaaagac tcactttttt tattgccttt tttttttttt
1741 ttaaagaata catactgtgg attcagtccc ttgtcacact tgaccttttg gcatacaccc
1801 actgtggact tttgcctctt ctgtaatggc tggcaatgac atttcaaact tacaatctgg
1861 aattgcactt ggtacattgg cattgcttgt tccactggga tggggaccag tgtgaagatg
1921 cctgttagat agactgccca cccctacttt ctctttttct ttatagcact taacaataac
1981 aaagtcttga tgatgtacag tattcaaact ttaggttgaa atacgttact ctttgattcc
2041 tagccagtag atcttatcta cactttaatg ggagagaatg gtggtgtgtg agtaggcaca
2101 aatttatgta aatagtgctc cttctcttta gtatgtttgc tttgggggta gaaaaatggt
2161 tttaacaaac actggtttcc atcaaatgaa tgatgtcttc tccatcctgt ggagacaaga
2221 atctgctaga aggatatgtg ctaagttcct tataagagat aatggtgctc tgcctatgcc
2281 agcttggcac ccgaagatgt gtgagtggac gtgaggctga gtattacctt agtatttttc
2341 tctgggtctt tgggaaacca tagtcaattt ttagaacata ttgctttcat tccccataaa
2401 ctcttcacac atgataactg tttaagcttt gaaaacacat actgaagtat tgtgagctta
2461 aaaaaacttt ttaaatattt gcatagtttt gaggtgaatt tgtttcctta cagatctctc
2521 ctaatcattg agatgtatat ttcaaaagag gaaattttac atgttgtcca aaacagcctt
2581 gctagtaact ggtgaatttt ggtattaact attattaaag tctttaaacg acacaggtac
2641 ctaaagatca ccttaatgtg gcaatttgtg atggtgtagc tagctgattg tgaaaactgt
2701 tcctttaaag tcgcttcttg catgttcggt gttagtcatc cagctcaggc ttgtgttgca
2761 gctgacaatc taggaaagac ggccttagag agtggtgcag gccccacact gacggactgc
2821 cttagaaacc cgacttcctc tagactttga accgccagac ttttctcttg tttagaaaac
2881 aaacttatat ttaatgtact tactacttaa aactccagac agagatataa tgtagaaggc
2941 aaatattggc caattttttc ctctttttaa gtggaagaca aatgaacggg atttttaaag
3001 tgcttttaaa gtgcatgaat ggttaataaa tcagtatgaa ttgtaagcct tcatcttaca
3061 tccaagtcct tagttggtta gggtttcttt tctttctttt ttaaagagtg tcaattacct
3121 tttgaacctg tgaaaatttg atagttgtta acagtctgat ggtcctaatt ctttcttttc
3181 attctagaaa tgaatgtggt tgtaatcatg ttcctaattc ttgggacaac ctgcaagaca
3241 gtgagacagt ttaaaaatta cctttcatgt tgaaaaagtc tgaaacagag aacccaatga
3301 tatttaaaat aaatgctaca taaaactctt tttaaaattt tgattttaac ttaattaaaa
3361 caatgtcata aatatgcttt ttgattttgt tactgctttt aatattaaag taatagaata
3421 ttgaagcaat attgtctagc actctgctgg acattaagtc cgcgggagga gaagtgaaca
3481 ggaatcgatt ctttgtcttt taactgccct tagttaggag atgttaaaat acttggcacc
3541 tctggttata tgtatgttat gtgtgttctc ccccctaaaa tttctaagca catttattca
3601 cttttaaaat gaatctttaa aagattatag ttagtagtta tagttaatat tctatttact
3661 tggaaaaatg tgaataaatg gatcttcaaa agattcattt taaaaatgaa taaatgtata
3721 ataggctata ggtgatctta cttgcgtatt aggtaggagg cacatattta taccatttca
3781 tatgtaatat ctttgtcatt gtgtttcatc gaagatcaat tgctagcaac ttgaagggta
3841 tttatacttg ggtcacttga actcagctga ctaaattgta agaacgagag caagcaagat
3901 ggctgttatt ggaagccata acttccagaa gataattctg cacaattcgt aagttaaaaa
3961 aaatctgtag ggtcttccac tatccttttt caggttgata atgctgttct gggcacacac
4021 tttgtaaatg gaatgttatg gtacagtcgc ctctcagtat ccatggggca ttggttccag
4081 gcctccctta ggatgccaaa ctccatggat actcaaaccc cttctataaa atggtgtagt
4141 atttgcatat atcctagaca catcctcctg tatgctttaa atcatctcta gattacttaa
4201 aatacctaat acaatgtaaa tgctctgtaa atagttgtta tactatattg tttagggaat
4261 aatgacaagg aaaaaaaagc ctgtacatgt tcagcacaag tgaaaccatc ctttttgccc
4321 ccaaatattt tcaatttgta tttggttgaa tccatggatg cagaactcac ggatacagag
4381 ggccgactgt actttcttta aagtgttcaa aagtattact agcaaagagg aggaggagca
4441 aagcatatat cagaagtaaa acaatttttc ttgttgactg ctttggtaaa aaacagtttg
4501 atggatagtt ttacatttca ctggactaga taaaaaatgg tgctaatatt tatgtagctt
4561 gatgctatag ttgctttggt atcaaactta atacctaacc catataagat ccttattata
4621 taattttgtg atcagtaaaa tgatatttta aagagtgatc ttaaaaatat gacctggtca
4681 ttgcacaacg tttgcatttg aaatgaattt ttgtactata gggtggatat ggagttattc
4741 agtgcaagtg tgtgcttaat atcaaaccct atgcaaggag ctatgtctag atttttggtc
4801 caaatttgcc tccttcaagc ctactagtgt gagatggaaa aaaatcgatt gctcttttaa
4861 tattatttcc attttgaaat tctcgacact tgaatgaagg cagtagaggc ctctttttgg
4921 atttctcttc taataacaaa actttattta gggaaggttt ccctgtgcta tcgtaagttt
4981 gttttgagca ctgcattcac tttaaaattc tggaggaaca aaggctgggc acataatcac
5041 aaagcccagg ccacacaata attcggggtt gtattttcta agaactatgt attgttttta
5101 gcttatagtt aatattgtat ttacttggaa aaatgtgaat aaagttaatt aacattacaa
5161 aaaaaaaaaa aaaa
//