LOCUS BC071600 5087 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens RAB12, member RAS oncogene family, mRNA (cDNA clone
IMAGE:30344707), complete cds.
ACCESSION BC071600
VERSION BC071600.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5087)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5087)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: n Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 70778967
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..5087
/db_xref="H-InvDB:HIT000264429"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30344707"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5087
/gene="RAB12"
/db_xref="GeneID:201475"
/db_xref="HGNC:HGNC:31332"
CDS 292..636
/gene="RAB12"
/codon_start=1
/product="RAB12 protein"
/protein_id="AAH71600.2"
/db_xref="GeneID:201475"
/db_xref="HGNC:HGNC:31332"
/translation="MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQ
VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGKGATATLGRASWRPGSCPSPRGLRVS
SSLGVFRGWASR"
BASE COUNT 1277 a 1082 c 1332 g 1396 t
ORIGIN
1 gggatgctgc tgccgctact gcggagtagc tgcttccctt cctcctctcc cggcggcggc
61 ggcggcagcg gcggaggagg aggaggaggg gacccgggcg cagagagccg gccggcggcg
121 cagttgcagc gcggagccca cgggccgccg gggccgctcc agcgggcgga agccgagccc
181 ggggccgacc ccccgcgcgc ggcggaggcc gagggggcgc cggggcccgg ggcgcgcagc
241 cggggggcgg gcggcggcgg gcggcgggcc gagcgggagc cgcatgcgtg tatggatccg
301 ggcgccgcgc tgcagaggcg ggccgggggc ggcggcggtc tgggcgcggg ctccccggcg
361 ctgtcgggcg gccagggccg ccggaggaag cagcccccca ggccggccga cttcaagttg
421 caggtcatca ttatcggctc ccgcggcgtg ggcaagacca gcctgatgga gcgcttcacc
481 gacgacacct tctgcgaggc ctgcaagtcc accgtgggta agggcgccac ggcgaccctg
541 ggccgggcct cctggcgccc gggcagttgc ccttcgcccc gtgggcttcg agtctcatcg
601 agcctgggag tctttcgggg atgggcctct cggtgaaact aggggcgggg gtctccttgg
661 agcgccctgc atcccaatcc caaagcctgg cagaggtttt cgtgccgcct ccgggcagac
721 ctgcccttgg cccccggccc tgcctcagag gtcctggcag cccccggggc ctgtgggggc
781 ggctctccac ggaaacttcg gcccttagca tactcgccca agaaaaagct gggttcgagt
841 ggagcgcagg caggcagggg agtgaacgcc taaggccgct ctcgcccggc ccgccaaggc
901 cagcgcgcgc cgtctgctgc gggtgtgatc cctgcgcaac cagggcagtt ttcttatttt
961 gaacccattt tcaagaaatg aagtttaaag tcacctatgg agaatgttaa aactaaaact
1021 acagtaagtt tctcgtgcta gccgtacgta cggggcagag gagcttcagc tgtatttatc
1081 catgacctca aacaacccgg tgactggcgg gcatggggtt gattcctcca gtaccgctgt
1141 tttcggtgag ggacaggagt gaagtaagta caggaacgct ccagggtcaa ggaggaaaac
1201 agccgcggat ctgaaatgga aactgcaggg gaaatttttt taattaagtc atgcttagag
1261 gacttgacat tgagatttct cagttggatg tgggtagcag ttgtttctat ggaaaacccc
1321 ttaaaagatg tccaaactag gagaaccccg ttctttaaaa taaagggcag tcacttccgt
1381 gataggaagt gagagatttc cccaggggcg gtccaagaaa ctgagtagtc aggagatttg
1441 atagaattaa aagcataatt tcatgtaatt ctatttatta atagtgttat aaccagtggt
1501 agttccaagg ctgtcagtac gattttgaga tgacttgatt tgaaattgtc atgtaacaaa
1561 acagtactac atttaaagtg tcttattgga aagtgaaacc tccaattttt gtactgtctt
1621 tcttggtttg ttttcaagaa cttacttccc ttaatgcttt tttggaatag atcattttgg
1681 aaatatttgt gatgtctgta ccatatgttt ttaaaatgtt gtcgttggag acattatatt
1741 aaaatgagta gcataactat acctgtttca aatatccagt cttggatcat gcagagtaca
1801 gggagttgtt aaaccatcaa atgagggtta ggctgttatt ttagtacctg acataaataa
1861 agtagggtta aattccgttt agaattgtca atattttatg gctccgtact tcagtatata
1921 aaaatgaggg ataatagagt tgcactgtgt gatgaagaga aatcaggtac ccataggtgg
1981 gtaactgagg gcttgagtgg atggagggtg agatggatga gcaaaggtgt gctttagaat
2041 gcagaagagg agagaggaag aaggattttc taagcctggc agcagtggag cagcccccca
2101 cctctgggga gggttcctta ggggacttgg gaatggatgc tgcgagacct tgaccgccat
2161 gctaaggaga atggacccga tcctatgggc acctggaacc aaaagactcc ttagtaaggc
2221 attggcacga aaacagtttg gcagagttgc ataggatgtt tgggaataag gaagagctgc
2281 ggaggatgct tgggaataag gaagaaacca ggaggcaagg agaccaagca gtttgtttct
2341 gtgtccctta acaaacatgc acttacccga gcacatactc cctactctga gtgtggttga
2401 atttctgtct tgctcatttt tgtttgcttc acatgtagcc tataatactt agagtactgg
2461 agtactttag tactcagtgc gtgcttctaa ctgtgggatg ttcagagaat gatcatggcc
2521 cctggcctgc tgcagagcgg gaagacactg tgagaacgcc agccagctcc acttcagttt
2581 ctgcttcaga gttgcttttc ccctccactc atcagatcgt ttgttgagca cctactgtgt
2641 gttgggtgtt atgctaccca gtggggattc agtggtaaac aggacatcga ctctgtccag
2701 aagtggatcg gagcttctgg gagctgcgta accgcttgtc agggcagtga cagatgtgta
2761 tgggtatttg ggagcacagt gaaagcgcct ccagtcgagg ctagtgatga ggcctggtca
2821 gagaaggctt cctcgtcatt ggaatgtttg aagataagtt tgttcctcta gttcctttag
2881 aaaaatgcaa attaaatatg gtactgggtg tggtgtagaa ttgtggttgc cttacctgaa
2941 cgcttaccat ttgagcagtt agctcccggg gttcttccca ggctggtttt tctagtttca
3001 tcttcatgta gtgcagtgaa ttccatatag agcaagagtc tcttccacag taggagtttc
3061 tccctaccct gtcagggctg ctcgcgacag ccgtctggga aagaccgtga gcctcacagc
3121 atggcccagg gaagagtccc tgagtgtgcc tggaccaaga tgggtcacta gagtggtagt
3181 attgtctaat tcctaggcta ggagagtgtt tccattaaga gcctttttat ttttatttat
3241 ttatttattt ttgagacaga gtcttgctct gtcacccagg ctggagtgca gtggtacgat
3301 catggctcac tgcagcctcg acctgccagg ctcacacaat cttcctgccg cagcctcctg
3361 agtagctggg actgcaggtg cacaccacca agcccttttt tgatttttag tagagacaaa
3421 gtcttgctat gttgtccagg ctggtctcaa actcctagtc tcaagcactt ggcctcccaa
3481 agtgctcaga ttacaggcgt aagccactgc tccttaccag taagtgccct tttaaagtaa
3541 atgggattca cttgaacttt ctataaaaga tccgtagtgg aagtccttag ggatttgaga
3601 tgatgaacta ttatgtaaaa ttataaatga gcaaaatgtt gttttttgta ttgttaatca
3661 aatcagaaac tggtttaaaa gatttacaaa attcacaagg gtatgaaaaa cagaggttgt
3721 atttactgat tggtctgttt aatggaaatt gtctaatgga attgtctcat attttcaaat
3781 gggattttgt tttcatggaa tttaattagt ctgattataa tttacaagtt cttttaaaaa
3841 gtacaggagc agctttttaa agtttgagaa acagaaaaaa gtaattgact aaagaaattt
3901 acaactaaca tgcctggtcc actattttcc tcatagcagt gcctgtatca caagcatact
3961 tatccaccat gaatctgtgt gtgcttttgc aagttgacat tattgcttcc tgagtgaagc
4021 tgtagaaacc atttctatct agcaatgccg aattcttgat cttggttcct tctgtttgac
4081 tctcattagt tttagcataa acaggtaaat gtgctttttt aaaagtatat ttcaaaaaac
4141 aactccataa aattacatat ctgtcaatct ttgttttatt tctatgttac tgttggaagc
4201 tagctgttaa ttttgtttag gttgaaatgg ttttaccttt taaaaaccta cccccgccct
4261 tgctccaaca gcattgcatg ctggaaaaaa cactagagta agaataagaa atgtgggttc
4321 ttgctccagg ctctgccact aactagtttg tgactttgga taagtaatgt agttgtctgt
4381 gcctataaat agaagtagta gtagtagtag tagtagtagt agtagtagta gtagtggtca
4441 ctgctatatg gtgagcactt actacaccag cagaaggcct catcacagcc ctgaaagtta
4501 tccccgtttt acagatgagg acgagaagtc tcagagaggt agaaatttac ctgctgtggc
4561 acagctgctc agcaagtggt cagggccaag ggctgcaagt gaattctttt taactatctt
4621 tctgtctgtt ccttagctta ctttcaggtt tagattgact ttgctttgtt gaaaatacta
4681 atggctcaca cacataaagg tcagacatga tggagccctt tcctcgtttt agaatttggt
4741 ccttgttaca gccctgtgaa gatagtgaca taattatcct atggtattag tgaaactgat
4801 tttctttaag tgtgcccctg tcattacttg tcacttgcct tttgaattaa aataatgcta
4861 caagaactgc tttttaatct atatattcca tcattcaaat tcaagtgtct taagcctttt
4921 acataccaaa ataggtatat ttgaatacag gagaagtcaa agaaaggcaa tctggaccag
4981 aattctgatt tttctgggta gtaaagtttc cttcagaatg ctggtggcca gcataggatt
5041 gccagttctt tattttgcca agtaagaaca taaaaaaaaa aaaaaaa
//