LOCUS BC071593 5179 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
homolog, mRNA (cDNA clone MGC:87427 IMAGE:4375615), complete cds.
ACCESSION BC071593
VERSION BC071593.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5179)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5179)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: b Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4557694.
FEATURES Location/Qualifiers
source 1..5179
/db_xref="H-InvDB:HIT000264422"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87427 IMAGE:4375615"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5179
/gene="KIT"
/gene_synonym="C-Kit"
/gene_synonym="CD117"
/gene_synonym="PBT"
/gene_synonym="SCFR"
/db_xref="GeneID:3815"
/db_xref="MIM:164920"
CDS 77..3007
/gene="KIT"
/gene_synonym="C-Kit"
/gene_synonym="CD117"
/gene_synonym="PBT"
/gene_synonym="SCFR"
/codon_start=1
/product="KIT protein"
/protein_id="AAH71593.1"
/db_xref="GeneID:3815"
/db_xref="MIM:164920"
/translation="MRGARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS
DLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHG
LSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDL
RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSK
ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT
ISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI
VEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF
LVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRC
SASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF
KGNNKEQIHPHTLFTPLLIGFVIVAGMMCIIVMILTYKYLQKPMYEVQWKVVEEINGN
NYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKM
LKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL
RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRR
SVRIGSYIERDVTPAIMEDDELAIDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI
LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAHESIFNCVYTFESDVWSYG
IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKR
PTFKQIVQLIEKQISESTNHIYSNLANCSPNRQKPVVDHSVRINSVGSTASSSQPLLV
HDDV"
BASE COUNT 1489 a 1061 c 1126 g 1503 t
ORIGIN
1 ggctttgccg cgctcgctgc acttgggcga gagctggaac gtggaccaga gctcggatcc
61 catcgcagct accgcgatga gaggcgctcg cggcgcctgg gattttctct gcgttctgct
121 cctactgctt cgcgtccaga caggctcttc tcaaccatct gtgagtccag gggaaccgtc
181 tccaccatcc atccatccag gaaaatcaga cttaatagtc cgcgtgggcg acgagattag
241 gctgttatgc actgatccgg gctttgtcaa atggactttt gagatcctgg atgaaacgaa
301 tgagaataag cagaatgaat ggatcacgga aaaggcagaa gccaccaaca ccggcaaata
361 cacgtgcacc aacaaacacg gcttaagcaa ttccatttat gtgtttgtta gagatcctgc
421 caagcttttc cttgttgacc gctccttgta tgggaaagaa gacaacgaca cgctggtccg
481 ctgtcctctc acagacccag aagtgaccaa ttattccctc aaggggtgcc aggggaagcc
541 tcttcccaag gacttgaggt ttattcctga ccccaaggcg ggcatcatga tcaaaagtgt
601 gaaacgcgcc taccatcggc tctgtctgca ttgttctgtg gaccaggagg gcaagtcagt
661 gctgtcggaa aaattcatcc tgaaagtgag gccagccttc aaagctgtgc ctgttgtgtc
721 tgtgtccaaa gcaagctatc ttcttaggga aggggaagaa ttcacagtga cgtgcacaat
781 aaaagatgtg tctagttctg tgtactcaac gtggaaaaga gaaaacagtc agactaaact
841 acaggagaaa tataatagct ggcatcacgg tgacttcaat tatgaacgtc aggcaacgtt
901 gactatcagt tcagcgagag ttaatgattc tggagtgttc atgtgttatg ccaataatac
961 ttttggatca gcaaatgtca caacaacctt ggaagtagta gataaaggat tcattaatat
1021 cttccccatg ataaacacta cagtatttgt aaacgatgga gaaaatgtag atttgattgt
1081 tgaatatgaa gcattcccca aacctgaaca ccagcagtgg atctatatga acagaacctt
1141 cactgataaa tgggaagatt atcccaagtc tgagaatgaa agtaatatca gatacgtaag
1201 tgaacttcat ctaacgagat taaaaggcac cgaaggaggc acttacacat tcctagtgtc
1261 caattctgac gtcaatgctg ccatagcatt taatgtttat gtgaatacaa aaccagaaat
1321 cctgacttac gacaggctcg tgaatggcat gctccaatgt gtggcagcag gattcccaga
1381 gcccacaata gattggtatt tttgtccagg aactgagcag agatgctctg cttctgtact
1441 gccagtggat gtgcagacac taaactcatc tgggccaccg tttggaaagc tagtggttca
1501 gagttctata gattctagtg cattcaagca caatggcacg gttgaatgta aggcttacaa
1561 cgatgtgggc aagacttctg cctattttaa ctttgcattt aaaggtaaca acaaagagca
1621 aatccatccc cacaccctgt tcactccttt gctgattggt ttcgtaatcg tagctggcat
1681 gatgtgcatt attgtgatga ttctgaccta caaatattta cagaaaccca tgtatgaagt
1741 acagtggaag gttgttgagg agataaatgg aaacaattat gtttacatag acccaacaca
1801 acttccttat gatcacaaat gggagtttcc cagaaacagg ctgagttttg ggaaaaccct
1861 gggtgctgga gctttcggga aggttgttga ggcaactgct tatggcttaa ttaagtcaga
1921 tgcggccatg actgtcgctg taaagatgct caagccgagt gcccatttga cagaacggga
1981 agccctcatg tctgaactca aagtcctgag ttaccttggt aatcacatga atattgtgaa
2041 tctacttgga gcctgcacca ttggagggcc caccctggtc attacagaat attgttgcta
2101 tggtgatctt ttgaattttt tgagaagaaa acgtgattca tttatttgtt caaagcagga
2161 agatcatgca gaagctgcac tttataagaa tcttctgcat tcaaaggagt cttcctgcag
2221 cgatagtact aatgagtaca tggacatgaa acctggagtt tcttatgttg tcccaaccaa
2281 ggccgacaaa aggagatctg tgagaatagg ctcatacata gaaagagatg tgactcccgc
2341 catcatggag gatgacgagt tggccataga cttagaagac ttgctgagct tttcttacca
2401 ggtggcaaag ggcatggctt tcctcgcctc caagaattgt attcacagag acttggcagc
2461 cagaaatatc ctccttactc atggtcggat cacaaagatt tgtgattttg gtctagccag
2521 agacatcaag aatgattcta attatgtggt taaaggaaac gctcgactac ctgtgaagtg
2581 gatggcacat gaaagcattt tcaactgtgt atacacgttt gaaagtgacg tctggtccta
2641 tgggattttt ctttgggagc tgttctcttt aggaagcagc ccctatcctg gaatgccggt
2701 cgattctaag ttctacaaga tgatcaagga aggcttccgg atgctcagcc ctgaacacgc
2761 acctgctgaa atgtatgaca taatgaagac ttgctgggat gcagatcccc taaaaagacc
2821 aacattcaag caaattgttc agctaattga gaagcagatt tcagagagca ccaatcatat
2881 ttactccaac ttagcaaact gcagccccaa ccgacagaag cccgtggtag accattctgt
2941 gcggatcaat tctgtcggca gcaccgcttc ctcctcccag cctctgcttg tgcacgacga
3001 tgtctgagca gaatcagtgt ttgggtcacc cctccaggaa tgatctcttc ttttggcttc
3061 catgatggtt attttctttt ctttcaactt gcatccaact ccaggatagt gggcacccca
3121 ctgcaatcct gtctttctga gcacacttta gtggccgatg atttttgtca tcagccacca
3181 tcctattgca aaggttccaa ctgtatatat tcccaatagc aacgtagctt ctaccatgaa
3241 cagaaaacat tctgatttgg aaaaagagag ggaggtatgg actgggggcc agagtccttt
3301 ccaaggcttc tccaattctg cccaaaaata tggttgatag tttacctgaa taaatggtag
3361 taatcacagt tggccttcag aaccatccat agtagtatga tgatacaaga ttagaagctg
3421 aaaacctaag tcctttatgt ggaaaacaga acatcattag aacaaaggac agagtatgaa
3481 cacctgggct taagaaattt agtatttcat gctgggaatg agacataggc catgaaaaaa
3541 atgatcccca agtgtgaaca aaagatgctc ttctgtggac cactgcatga gcttttatac
3601 taccgacctg gtttttaaat agagtttgct attagagcat tgaattggag agaaggcctc
3661 cctagccagc acttgtatat acgcatctat aaattgtccg tgttcataca tttgagggga
3721 aaacaccata aggtttcgtt tctgtataca accctggcat tatgtccact gtgtatagaa
3781 gtagattaag agccatataa gtttgaagga aacagttaat accatttttt aaggaaacaa
3841 tataaccaca aagcacagtt tgaacaaaat ctcctctttt agctgatgaa cttattctgt
3901 agattctgtg gaacaagcct atcagcttca gaatggcatt gtactcaatg gatttgatgc
3961 tgtttgacaa agttactgat tcactgcatg gctcccacag gagtgggaaa acactgccat
4021 cttagtttgg attcttatgt agcaggaaat aaagtatagg tttagcctcc ttcgcaggca
4081 tgtcctggac accgggccag tatctatata tgtgtatgta cgtttgtatg tgtgtagaca
4141 aatatttgga ggggtatttt tgccctgagt ccaagagggt cctttagtac ctgaaaagta
4201 acttggcttt cattattagt actgctcttg tttcttttca catagctgtc tagagtagct
4261 taccagaagc ttccatagtg gtgcagagga agtggaaggc atcagtccct atgtatttgc
4321 agttcacctg cacttaaggc actctgttat ttagactcat cttactgtac ctgttcctta
4381 gaccttccat aatgctactg tctcactgaa acatttaaat tttacccttt agactgtagc
4441 ctggatatta ttcttgtagt ttacctcttt aaaaacaaaa caaaactaaa caaaaaactc
4501 cccttcctca ctgcccaata taaaaggcaa atgtgtacat ggcagagttt gtgtgttgtc
4561 ttgaaagatt caggtatgtt gcctttatgg tttccccctt ctacatttct tagactacat
4621 ttagagaact gtggccgtta tctggaagta accatttgca ctggagttct atgctctcgc
4681 acctttccaa agttaacaga ttttggggtt gtgttgtcac ccaagagatt gttgtttgcc
4741 atactttgtc tgaaaaattc ctttgtgttt ctattgactt caatgatagt aagaaaagtg
4801 gttgttagtt atagatgtct aggtacttca ggggcacttc attgagagtt ttgtcttgga
4861 tattcttgaa agtttatatt tttataattt tttcttacat cagatgtttc tttgcagtgg
4921 cttaatgttt gaaattattt tgtggctttt tttgtaaata ttgaaatgta gcaataatgt
4981 cttttgaata ttcccaagcc catgagtcct tgaaaatatt ttttatatat acagtaactt
5041 tatgtgtaaa tacataagcg gcgtaagttt aaaggatgtt ggtgttccac gtgttttatt
5101 cctgtatgtt gtccaattgt tgacagttct gaagaattct aataaaatgt acatatataa
5161 atcaaaaaaa aaaaaaaaa
//