LOCUS BC071561 5303 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens leucine-rich repeats and immunoglobulin-like domains
1, mRNA (cDNA clone MGC:87003 IMAGE:30340674), complete cds.
ACCESSION BC071561
VERSION BC071561.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5303)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5303)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54607117.
FEATURES Location/Qualifiers
source 1..5303
/db_xref="H-InvDB:HIT000264390"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87003 IMAGE:30340674"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5303
/gene="LRIG1"
/gene_synonym="DKFZP586O1624"
/gene_synonym="LIG-1"
/gene_synonym="LIG1"
/db_xref="GeneID:26018"
/db_xref="MIM:608868"
CDS 605..3817
/gene="LRIG1"
/gene_synonym="DKFZP586O1624"
/gene_synonym="LIG-1"
/gene_synonym="LIG1"
/codon_start=1
/product="LRIG1 protein"
/protein_id="AAH71561.1"
/db_xref="GeneID:26018"
/db_xref="MIM:608868"
/translation="MARPVRGGLGAPRRSPCLLLLWLVLVRLEPVTAAAGPRAPCAAA
CTCAGDSLDCGGRGLAALPGDLPSWTRSLNLSYNKFSEIDPAGFEDLPNLQEVYLNNN
ELTAVPSLGAASSHVVSLFLQHNKIRSVEGSQLKAYLSLEVLDLSLNNITEVRNTCFP
HGPPIKELNLAGNRIGTLELGAFDGLSRSLLTLRLSKNRITQLPVRAFKLPRLTQLDL
NRNRIRLIEGLTFQGLNSLEVLKLQRNNISKLTDGAFWGLSKMHVLHLEYNSLVEVNS
GSLYGLTALHQLHLSNNSIARIHRKGWSFCQKLHELVLSFNNLTRLDEESLAELSSLS
VLRLSHNSISHIAEGAFKGLRSLRVLDLDHNEISGTIEDTSGAFSGLDSLSKLLLLEP
SQSAGCSSPSQPHMSAGGRTLFGNKIKSVAKRAFSGLEGLEHLNLGGNAIRSVQFDAF
VKMKNLKELHISSDSFLCDCQLKWLPPWLIGRMLQAFVTATCAHPESLKGQSIFSVPP
ESFVCDDFLKPQIITQPETTMAMVGKDIRFTCSAASSSSSPMTFAWKKDNEVLTNADM
ENFVHVHAQDGEVMEYTTILHLRQVTFGHEGRYQCVITNHFGSTYSHKARLTVNVLPS
FTKTPHDITIRTTTMARLECAATGHPNPQIAWQKDGGTDFPAAQTPSLVVPLEDRVVS
VGETVALQCKATGNPPPRITWFKGDRPLSLTERHHLTPDNQLLVVQNVVAEDAGRYTC
EMSNTLGTERAHSQLSVLPAAGCRKDGTTVGIFTIAVVSSIVLTSLVWVCIIYQTRKK
SEEYSVTNTDETVVPPDVPSYLSSQGTLSDRQETVVRTEGGPQANGHIESNGVCPRDA
SHFPEPDTHSVACRQPKLCAGSAYHKEPWKAMEKAEGTPGPHKMEHGGRVVCSDCNTE
VDCYSRGQAFHPQPVSRDSAQPSAPNGPEPGGSDQEHSPHHQCSRTAAGSCPECQGSL
YPSNHDRMLTAVKKKPMASLDGKGDSSWTLARLYHPDSTELQPASSLTSGSPERAEAQ
YLLVSNGHLPKACDASPESTPLTGQLPGKQRVPLLLAPKS"
BASE COUNT 1233 a 1425 c 1490 g 1155 t
ORIGIN
1 gattgttcgg ctgcgaggtc ggcgggactc ttgctgcgcg gaggagccgt gcggaacccg
61 aggctgcgcg cgcgcgcgcg ctctctggcc gcggcgtggg gacagcgagg cgcactgggg
121 cctcccagcg cggggccggc cgcgccgtcc agcccgaggt ctacggcttt gcgctccgag
181 cccagaggaa gatgcctgcc ggcaccgagc tcgggctgcg gggctgaacg cctgtcttcc
241 aggcgcagcg gcagcactgc cctcggccgg tgtcggtagc ggcactcggc gtgccccggg
301 cggacgaaga gcgcaggctg ggtacacctt gcccgaatcg gcggagttcg cagctagcga
361 gggcgggccg gccggcccgg atgggcgcgg ggtttgcggc ccccgccggg tgctccggag
421 cggcccgggc accgggggca cgctgagtgc cggagccgcg gccgcagaga gaacttgggg
481 cgggggccat gccccggtgc ggagtctaga gccgagcgga gcgccccgcg ggcccgcccg
541 cgtctgcggc cgttcgggtc ctcacagtcc ccgcgcccgg agttcgcagc gcgctccaga
601 caagatggcg cggccggtcc ggggagggct cggggccccg cgccgctcgc cttgccttct
661 ccttctctgg ctggttttgg ttcggctgga gccggtgacc gccgcggccg gcccgcgggc
721 gccctgcgcg gccgcctgca cttgcgctgg ggactcgctg gactgcggtg ggcgcgggct
781 ggctgcgttg cccggggacc tgccctcctg gacgcggagc ctaaacctga gttacaacaa
841 attctctgag attgaccctg ctggttttga ggacttgccg aacctacagg aagtgtacct
901 caataataat gagttgacag cggtaccatc cctgggcgct gcttcatcac atgtcgtctc
961 tctctttctg cagcacaaca agattcgcag cgtggagggg agccagctga aggcctacct
1021 ttccttagaa gtgttagatc tgagtttgaa caacatcacg gaagtgcgga acacctgctt
1081 tccacacgga ccgcctataa aggagctcaa cctggcaggc aatcggattg gcaccctgga
1141 gttgggagca tttgatggtc tgtcacggtc gctgctaact cttcgcctga gcaaaaacag
1201 gatcacccag cttcctgtaa gagcattcaa gctacccagg ctgacacaac tggacctcaa
1261 tcggaacagg attcggctga tagagggcct caccttccag gggctcaaca gcttggaggt
1321 gctgaagctt cagcgaaaca acatcagcaa actgacagat ggggccttct ggggactgtc
1381 caagatgcat gtgctgcacc tggagtacaa cagcctggta gaagtgaaca gcggctcgct
1441 ctacggcctc acggccctgc atcagctcca cctcagcaac aattccatcg ctcgcattca
1501 ccgcaagggc tggagcttct gccagaagct gcatgagttg gtcctgtcct tcaacaacct
1561 gacacggctg gacgaggaga gcctggccga gctgagcagc ctgagtgtcc tgcgtctcag
1621 ccacaattcc atcagccaca ttgcggaggg tgccttcaag ggactcagga gcctgcgagt
1681 cttggatctg gaccataacg agatttcggg cacaatagag gacacgagcg gcgccttctc
1741 agggctcgac agcctcagca agctcctttt attagagcca tcccagtctg ctggctgcag
1801 ctccccgtcc cagccccata tgtctgctgg gggaaggact ctgtttggaa acaagatcaa
1861 gtctgtggct aagagagcat tctcggggct ggaaggcctg gagcacctga accttggagg
1921 gaatgcgatc agatctgtcc agtttgatgc ctttgtgaag atgaagaatc ttaaagagct
1981 ccatatcagc agcgacagct tcctgtgtga ctgccagctg aagtggctgc ccccgtggct
2041 aattggcagg atgctgcagg cctttgtgac agccacctgt gcccacccag aatcactgaa
2101 gggtcagagc attttctctg tgccaccaga gagtttcgtg tgcgatgact tcctgaagcc
2161 acagatcatc acccagccag aaaccaccat ggctatggtg ggcaaggaca tccggtttac
2221 atgctcagca gccagcagca gcagctcccc catgaccttt gcctggaaga aagacaatga
2281 agtcctgacc aatgcagaca tggagaactt tgtccacgtc cacgcgcagg acggggaagt
2341 gatggagtac accaccatcc tgcacctccg tcaggtcact ttcgggcacg agggccgcta
2401 ccaatgtgtc atcaccaacc actttggctc cacctattca cataaggcca ggctcaccgt
2461 gaatgtgttg ccatcattca ccaaaacgcc ccacgacata accatccgga ccaccaccat
2521 ggcccgcctc gaatgtgctg ccacaggtca cccaaaccct cagattgcct ggcagaagga
2581 tggaggcacg gatttccccg ctgcccagac cccatccttg gtggtcccct tggaagaccg
2641 tgtggtatct gtgggagaaa cagtggccct ccaatgcaaa gccacgggga accctccgcc
2701 ccgcatcacc tggttcaagg gggaccgccc gctgagcctc actgagcggc accacttgac
2761 ccctgacaac cagctcctgg tggttcagaa cgtggtggca gaggatgcgg gccgatatac
2821 ctgtgagatg tccaacaccc tgggcacgga gcgagctcac agccagctga gcgtcctgcc
2881 cgcagcaggc tgcaggaagg atgggaccac ggtaggcatc ttcaccattg ctgtcgtgag
2941 cagcatcgtc ctgacgtcac tggtctgggt gtgcatcatc taccagacca ggaagaagag
3001 tgaagagtac agtgtcacca acacagatga aaccgtcgtg ccaccagatg ttccaagcta
3061 cctctcttct caggggaccc tttctgaccg acaagaaacc gtggtcagga ccgagggtgg
3121 ccctcaggcc aatgggcaca ttgagagcaa tggtgtgtgt ccaagagatg caagccactt
3181 tccagagccc gacactcaca gcgttgcctg caggcagcca aagctctgtg ctgggtctgc
3241 gtatcacaaa gagccgtgga aagcgatgga gaaagctgaa gggacacctg ggccacataa
3301 gatggaacac ggtggccggg tcgtatgcag tgactgcaac accgaagtgg actgttactc
3361 caggggacaa gccttccacc cccagcctgt gtccagagac agcgcacagc caagtgcgcc
3421 aaatggcccg gagccgggtg ggagtgacca agagcattct ccacatcacc agtgcagcag
3481 gactgccgct gggtcctgcc ccgagtgcca agggtcgctc taccccagta accacgatag
3541 aatgctgacg gctgtgaaga aaaagccaat ggcatctcta gatgggaaag gggattcttc
3601 ctggacttta gcaaggttgt atcacccgga ctccacagag ctacagcctg catcttcatt
3661 aacttcaggc agtccagagc gcgcggaagc ccagtacttg cttgtttcca atggccacct
3721 ccccaaagca tgtgacgcca gtcccgagtc cacgccactg acaggacagc tccccgggaa
3781 acagagggtg ccactgctgt tggcaccaaa aagctaggtt ttgtctacct cagttcttgt
3841 cataccaatc tctacgggaa agagaggtag gagaggctgc gaggaagctt gggttcaagc
3901 atcactcatc tgtacatagt tgtaactccc atgtggagta tcagtcgctc acaggacttg
3961 gatctgaagc acagtaaacg caagagggga tttgtgtaca aaaggcaaaa aaagtatttg
4021 atatcattgt acataagagt tttcagagat ttcatatata tcttttacag aggctatttt
4081 aatctttagt gcatggttaa cagaaaaaaa ttatacaatt ttgacaatat tatttttcgt
4141 atcaggttgc tgtttaattt tggagggggt ggggaaatag ttctggtgcc ttaacgcatg
4201 gctggaattt atagaggcta caaccacatt tgttcacagg agtttttggt gcggggtggg
4261 aaggatggaa ggccttggat ttatattgca cttcatagac ccctaggctg ctgtgcggtg
4321 ggactccaca tgcgccggaa ggagcttcag gtgagcactg ctcatgtgtg gatgcccctg
4381 caacaggctt ccctgtctgt agagccaggg gtgcaagtgc catccacact tgcagtgaat
4441 ggcttttcct tttaggttta agtcctgtct gtctgtaagg cgtagaatct gtccgtctgt
4501 aaggcgtaga atgagggttg ttaatccatc acaagcaaaa ggtcagaaca gttaaacact
4561 gcctttcctc ctcctcttat tttatgataa aagcaaatgt ggccttctca gtatcattcg
4621 attgctattt gagactttta aattaaggta aaggctgctg gtgttggtac ctgtggattt
4681 ttctatactg atgttttcgt tttgccaata taatgagtat tacattggcc ttgggggaca
4741 gaaaggagga agttctgact tttcagggct accttatttc tactaaggac ccagagcagg
4801 cctgtccatg ccattccttc gcacagatga aactgagctg ggactggaaa ggacagccct
4861 tgacctgggt tctgggtata atttgcactt ttgagactgg tagctaacca tcttatgagt
4921 gccaatgtgt catttagtaa aacttaaata gaaacaaggt ccttcaaatg ttcctttggc
4981 caaaagctga agggagttac tgagaaaata gttaacaatt actgtcaggt gtcatcactg
5041 ttcaaaaggt aagcacattt agaattttgt tcttgacagt taactgacta atcttacttc
5101 cacaaaatat gtgaatttgc tgcttctgag aggcaatgtg aaagagggag tattactttt
5161 atgtacaaag ttatttattt atagaaattt tggtacagtg tacattgaaa accatgtaaa
5221 atattgaagt gtctaacaaa tggcattgaa gtgtctttaa taaaggttca tttataaatg
5281 tcaaaagaaa aaaaaaaaaa aaa
//