LOCUS BC070482 827 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens high-mobility group box 3, mRNA (cDNA clone MGC:90319
IMAGE:6140626), complete cds.
ACCESSION BC070482
VERSION BC070482.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 827)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 827)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4885420.
FEATURES Location/Qualifiers
source 1..827
/db_xref="H-InvDB:HIT000264356"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:90319 IMAGE:6140626"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..827
/gene="HMGB3"
/gene_synonym="HMG2A"
/gene_synonym="HMG4"
/db_xref="GeneID:3149"
/db_xref="MIM:300193"
CDS 192..794
/gene="HMGB3"
/gene_synonym="HMG2A"
/gene_synonym="HMG4"
/codon_start=1
/product="HMGB3 protein"
/protein_id="AAH70482.1"
/db_xref="GeneID:3149"
/db_xref="MIM:300193"
/translation="MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKK
CSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFL
FCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY
KSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE"
BASE COUNT 252 a 202 c 228 g 145 t
ORIGIN
1 cgcaccgccc gctcccgccg ccgccgccgc cgccgccgcc gccgccgcag cgcccgcaca
61 actttccggc ccgcgccgcc gtgagcgcgc cctgccgccg cctccccctg cctctactcc
121 ccattccctt cccgccccct ccgccttccc tcctgctagg cggccgggaa ggaagaagca
181 attcagtcag gatggctaaa ggtgacccca agaaaccaaa gggcaagatg tccgcttatg
241 ccttctttgt gcagacatgc agagaagaac ataagaagaa aaacccagag gtccctgtca
301 attttgcgga attttccaag aagtgctctg agaggtggaa gacgatgtcc gggaaagaga
361 aatctaaatt tgatgaaatg gcaaaggcag ataaagtgcg ctatgatcgg gaaatgaagg
421 attatggacc agctaaggga ggcaagaaga agaaggatcc taatgctccc aaaaggccac
481 cgtctggatt cttcctgttc tgttcagaat tccgccccaa gatcaaatcc acaaaccccg
541 gcatctctat tggagacgtg gcaaaaaagc tgggtgagat gtggaataat ttaaatgaca
601 gtgaaaagca gccttacatc actaaggcgg caaagctgaa ggagaagtat gagaaggatg
661 ttgctgacta taagtcgaaa ggaaagtttg atggtgcaaa gggtcctgct aaagttgccc
721 ggaaaaaggt ggaagaggaa gatgaagaag aggaggagga agaagaggag gaggaggagg
781 aggaggatga ataaagaaac tgtttatctg tcaaaaaaaa aaaaaaa
//