LOCUS BC070089 3611 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 8 family, member E,
mRNA (cDNA clone MGC:87470 IMAGE:30346745), complete cds.
ACCESSION BC070089
VERSION BC070089.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3611)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3611)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: o Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40217802.
FEATURES Location/Qualifiers
source 1..3611
/db_xref="H-InvDB:HIT000264047"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87470 IMAGE:30346745"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3611
/gene="LRRC8E"
/gene_synonym="FLJ23420"
/db_xref="GeneID:80131"
/db_xref="HGNC:HGNC:26272"
CDS 102..2492
/gene="LRRC8E"
/gene_synonym="FLJ23420"
/codon_start=1
/product="leucine rich repeat containing 8 family, member
E"
/protein_id="AAH70089.1"
/db_xref="GeneID:80131"
/db_xref="HGNC:HGNC:26272"
/translation="MIPVAEFKQFTEQQPAFKVLKPWWDVLAEYLTVAMLMIGVFGCT
LQVTQDKIICLPNHELQENLSEAPCQQLLPRGIPEQIGALQEVKGLKNNLDLQQYSFI
NQLCYETALHWYTKYFPYLVVIHTLIFMVCTSFWFKFPGTSSKIEHFISILGKCFDSP
WTTRALSEVSGENQKGPAATERAAATIVAMAGTGPGKAGEGEKEKVLAEPEKVVTEPP
VVTLLDKKEGEQAKALFEKVKKFRMHVEEGDILYTMYIRQTVLKVCKFLAILVYNLVY
VEKISFLVACRVETSEVTGYASFCCNHTKAHLFSKLAFCYISFVCIYGLTCIYTLYWL
FHRPLKEYSFRSVREETGMGDIPDVKNDFAFMLHLIDQYDSLYSKRFAVFLSEVSESR
LKQLNLNHEWTPEKLRQKLQRNAAGRLELALCMLPGLPDTVFELSEVESLRLEAICDI
TFPPGLSQLVHLQELSLLHSPARLPFSLQVFLRDHLKVMRVKCEELREVPLWVFGLRG
LEELHLEGLFPQELARAATLESLRELKQLKVLSLRSNAGKVPASVTDVAGHLQRLSLH
NDGARLVALNSLKKLAALRELELVACGLERIPHAVFSLGALQELDLKDNHLRSIEEIL
SFQHCRKLVTLRLWHNQIAYVPEHVRKLRSLEQLYLSYNKLETLPSQLGLCSGLRLLD
VSHNGLHSLPPEVGLLQNLQHLALSYNALEALPEELFFCRKLRTLLLGDNQLSQLSPH
VGALRALSRLELKGNRLEALPEELGNCGGLKKAGLLVEDTLYQGLPAEVRDKMEEE"
BASE COUNT 791 a 1032 c 1039 g 749 t
ORIGIN
1 gactcaccct cgcggcccgc ccgggaactc tgcgggagtc gcggcagctc cgctcccaga
61 gacccaggag ttgggcccag cgtccctccc ggaacggcag catgatccca gtggccgagt
121 tcaagcagtt cacggaacag cagcctgcgt tcaaggtgct caaaccctgg tgggacgtgc
181 tggccgagta cctcaccgtg gccatgctca tgattggggt ctttggctgc accctccagg
241 tgacacagga caagatcatc tgtctaccca atcatgagct ccaggagaac ttatcagagg
301 ccccgtgcca gcaattgctg cctcggggga tccctgagca gattggggcc ctgcaggagg
361 ttaaaggcct taagaacaat ttggacctgc agcaatacag ctttattaac cagctgtgtt
421 atgagacggc cctgcactgg tataccaagt acttccctta cctcgtggtc attcacacac
481 tcatcttcat ggtctgcacc agtttctggt tcaagttccc tggcaccagc tccaagattg
541 aacacttcat ctccatcctg ggcaagtgtt tcgactctcc atggaccacc agggccctat
601 ccgaggtctc cggggagaac cagaagggcc cagcagccac cgaacgggct gcggccacca
661 tagtggccat ggcagggacc gggccgggga aggcagggga gggtgagaag gagaaagtgc
721 tggcggaacc ggagaaggtg gtgaccgagc ctccagttgt caccctgttg gacaagaagg
781 agggtgagca agccaaagcc ctgtttgaga aggtgaagaa gttccgcatg cacgtggaag
841 agggcgacat cctgtacacc atgtacatcc gacagacggt gctgaaagtg tgtaagttcc
901 tggccatcct ggtctacaac ctggtctatg tggagaagat cagtttcctg gtggcctgta
961 gggtggagac gtcagaggtc acgggctacg ccagcttctg ctgcaaccac accaaggccc
1021 acctcttctc caagctggcc ttctgttaca tctcctttgt gtgcatctac ggacttacct
1081 gcatctacac gctctactgg ctcttccacc ggcccctcaa ggagtactcc ttccgttccg
1141 tgcgggagga gactggcatg ggggacattc ctgacgtcaa gaatgacttc gccttcatgc
1201 tgcacctcat cgatcagtac gactccctct actccaagcg cttcgccgtc ttcctgtccg
1261 aggtcagcga aagccgtcta aagcagctca atctcaacca cgagtggacc cccgagaagc
1321 ttcgacagaa gctgcagcgc aatgccgcgg gccggctgga gctggccctc tgcatgctgc
1381 cgggtctgcc cgacaccgtc tttgagctca gtgaggtgga gtcactcagg ctggaggcca
1441 tctgcgatat caccttcccc ccggggctgt cacagctggt gcacttgcag gagctcagct
1501 tgctccactc gcccgccagg ctacccttct ccttgcaggt cttcctgcgg gaccacctga
1561 aggtgatgcg cgtcaaatgc gaggagctcc gcgaggtgcc gctttgggtg tttgggctgc
1621 ggggcttgga ggagctgcac ctggaggggc ttttccccca ggagctagct cgggcagcca
1681 ccctggagag cctccgggag ctgaagcagc tcaaggtgtt gtccctccgg agcaacgccg
1741 ggaaggtgcc agccagtgtg accgacgttg ctggccacct gcagaggctc agcctgcaca
1801 acgatggggc ccgtctggtt gccctgaaca gcctcaagaa gctggcggca ttgcgggagc
1861 tggagctggt ggcctgcggg ctggagcgca tcccccatgc agtgttcagc ctgggtgcgc
1921 tgcaggaact tgacctcaag gacaaccacc tgcgctccat cgaggaaatc ctcagcttcc
1981 agcactgccg gaagctggtc acgctcaggc tgtggcacaa ccagatcgcc tacgtccctg
2041 agcacgtgcg gaagctcagg agcctggagc agctctacct cagctacaac aagctggaga
2101 ccctgccctc ccagctcggc ctgtgctcag gcctccgtct gctggatgtg tcccacaatg
2161 ggctacactc cctgccaccc gaggtgggcc tcctgcagaa cctacagcac ctggccctct
2221 cctacaatgc cctggaggcc ctgcccgaag agctcttctt ctgccgcaag ctgcggacgt
2281 tgcttctggg cgacaaccag ctgagccagc tctcgcccca cgtgggtgcc ctcagagccc
2341 tcagccgcct ggagctcaaa ggcaaccgct tagaggcgct gccagaagaa cttggcaact
2401 gtggggggct caagaaggcg gggctcctgg tggaagacac gctttaccag ggtctgccgg
2461 cagaagtgcg ggacaagatg gaggaggaat gaagctgggg tggggccgtt ttaggtagag
2521 ccttaaaaat gcttctgccc tggaatctca accattgtct tccaagatag gaagccaagt
2581 gggtccaggc caggagatgg gggggggcgg gggcagctgt gtcatctttc tggggcccag
2641 gaggatctgg gctggtttgt ctggggagac agacaggatg ttgtggaggt ggggtggaac
2701 ctggtatgga gggattaact cagtcatggc attctccgac caaaaccaca cctgtgtctc
2761 tggcaggctg gctggccttg ctcccatccc tagaactgct gcctctccct ggatattcca
2821 gctcaattag tgccacatat gggggaaacg acacatccca gtgggatttc caacactccc
2881 cctccccatg caacaaagca acttacttct ggagttctct cccaaggaga ggacacagac
2941 acagttgttt gctgtgttat atgttagctc cgaacaatgg ttctcatttg gctaagcatc
3001 aaaatcacct agggagtcgg tgcaaaacaa aatatcccag tcccctcccc tgaaacactg
3061 actcaggagg tttggttggg ggccaggagt ctgttcctaa atattccagg tagttctggt
3121 gcaggtaagt ggccctgaga cagtatgttg ggaaatgctg acgtaaaggt atcagggccg
3181 ggcgctgtgg ctcatgacta taatcccagc tgtttgagag gccaatgcag gaggatggtt
3241 gagctcagga gttcgagatc agcctgggta acatagcgag accccacctc tgccaaaaaa
3301 aaaaaaaata gggtatccaa atatctagat tctgatccct tttgaggtcc tagacccttt
3361 gagaaactga tgaagccagg cacctccttc ctcaggaaaa tgctggtgta caaatacaca
3421 caaagctctt caggcagctg atagatttcc cccagagagc tattcaagga cttcctaagg
3481 tgggtggact gcagggttag gacacctgct atagaggtga catttttcca aggacaagca
3541 gggactttgg tcttgactgt tctctgggtg cttaataaat aatactaatt atgccaaaaa
3601 aaaaaaaaaa a
//