LOCUS BC070035 4387 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA
(cDNA clone MGC:87005 IMAGE:4373827), complete cds.
ACCESSION BC070035
VERSION BC070035.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4387)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4387)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: a Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254809.
FEATURES Location/Qualifiers
source 1..4387
/db_xref="H-InvDB:HIT000263993"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87005 IMAGE:4373827"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4387
/gene="NR1D2"
/gene_synonym="BD73"
/gene_synonym="EAR-1r"
/gene_synonym="Hs.37288"
/gene_synonym="HZF2"
/gene_synonym="RVR"
/db_xref="GeneID:9975"
/db_xref="MIM:602304"
CDS 207..1433
/gene="NR1D2"
/gene_synonym="BD73"
/gene_synonym="EAR-1r"
/gene_synonym="Hs.37288"
/gene_synonym="HZF2"
/gene_synonym="RVR"
/codon_start=1
/product="NR1D2 protein"
/protein_id="AAH70035.1"
/db_xref="GeneID:9975"
/db_xref="MIM:602304"
/translation="MEVNAGGVIAYISSSSSASSPASCHSEGSENSFQSSSSSVPSSP
NSSNSDTNGNPKNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSGVTKFSGMVLL
CKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCR
FKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQ
TALPAQEQLRPKPQLEQENIKSSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENSA
ESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQHLNGQFKGRNIMHYPNGH
AICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENKNSYLCNTGGRMHLYSVHIQPKFH
QKQQYHTISSLNHEVL"
BASE COUNT 1336 a 800 c 898 g 1353 t
ORIGIN
1 ggtcgccggc cgccgccacc ctctctcgct gcagcctgct gtgcgctgca cggcctgggg
61 cccgggagcc ccgcccgctc tgcccatgag ggggccccgc gaccaccgct gcttccagcc
121 cggggcggcg cggcgctgag gcggcggcgg cggcgctgcc ccctctgcgg gaagcgggcg
181 gccccggccg cctccgcgag ggcaccatgg aggtgaatgc aggaggtgtg attgcctata
241 tcagttcttc cagctcagcc tcaagccctg cctcttgtca cagtgagggt tctgagaata
301 gtttccagtc ctcctcctct tctgttccat cttctccaaa tagctctaat tctgatacca
361 atggtaatcc caagaatggt gatctcgcca atattgaagg catcttgaag aatgatcgaa
421 tagattgttc tatgaaaaca agcaaatcga gtgcacctgg gatgacaaaa agtcatagtg
481 gtgtgacaaa atttagtggc atggttctac tgtgtaaagt ctgtggggat gtggcgtcag
541 gattccacta tggagttcat gcttgcgaag gctgtaaggg tttctttcgg agaagtattc
601 aacaaaacat ccagtacaag aagtgcctga agaatgaaaa ctgttctata atgagaatga
661 ataggaacag atgtcagcaa tgtcgcttca aaaagtgtct gtctgttgga atgtcaagag
721 atgctgttcg gtttggtcgt attcctaagc gtgaaaaaca gaggatgcta attgaaatgc
781 aaagtgcaat gaagaccatg atgaacagcc agttcagtgg tcacttgcaa aatgacacat
841 tagtagaaca tcatgaacag acagccttgc cagcccagga acagctgcga cccaagcccc
901 aactggagca agaaaacatc aaaagctctt ctcctccatc ttctgatttt gcaaaggaag
961 aagtgattgg catggtgacc agagctcaca aggatacctt tatgtataat caagagcagc
1021 aagaaaactc agctgagagc atgcagcccc agagaggaga acggattccc aagaacatgg
1081 agcaatataa tttaaatcat gatcattgcg gcaatgggct tagcagccat tttccctgta
1141 gtgagagcca gcagcatctc aatggacagt tcaaagggag gaatataatg cattacccaa
1201 atggtcatgc catttgtatt gcaaatggac attgtatgaa cttctccaat gcttatactc
1261 aaagagtatg tgatagagtt ccgatagatg gattttctca gaatgagaac aagaatagtt
1321 acctgtgcaa cactggagga agaatgcatc tgtacagtgt tcatattcag ccaaaatttc
1381 accaaaaaca gcagtaccac accatttcca gtttaaacca tgaagtcctt tgatagtgct
1441 tggtattttc tactgacagg tttgtccaat gagtaagtct ccatatgtgg atcctcataa
1501 atcaggacat gaaatctggg aagaattttc gatgagcttc actccagcag tgaaagaagt
1561 ggtggaattt gcaaagcgta ttcctgggtt cagagatctc tctcagcatg accaggtcaa
1621 ccttttaaag gctgggactt ttgaggtttt aatggtacgg ttcgcatcat tatttgatgc
1681 aaaggaacgt actgtcacct ttttaagtgg aaagaaatat agtgtggatg atttacactc
1741 aatgggagca ggggatctgc taaactctat gtttgaattt agtgagaagc taaatgccct
1801 ccaacttagt gatggagaga tgagtttgtt tacagctgtt gtcctggtat ctgcagatcg
1861 atctggaata gaaaacgtca actctgtgga ggctttgcag gaaactctca ttcgtgcact
1921 aaggacctta ataatgaaaa accatccaaa tgaggcctct atttttacaa aactgcttct
1981 aaagttgcca gatcttcgat ctttaaacaa catgcactct gaggagctct tggcctttaa
2041 agttcaccct taaggccttt gtttatttaa acatgaactg atggtaactg tacattttgt
2101 gctaaaatgc atatttatat gtgtatacca tatgtggaga tagaaaagac ctttaagaca
2161 ataaaagatt gtaggctatc tctgtaatca tgcaatagct gttcggattg agaactctcc
2221 agccatgatt agacgttgac tgcatctccc tgatagacca atcagctgtg tcgcacttaa
2281 actggagaag ttacactgaa gtataatcac actgaatgtt agactttttc atctgccaaa
2341 accaaaaacc attttgatct ccctgtggtt atcaatataa cgcacaatca caagtgtatg
2401 aggacttaga aattaatcct ttgtggtagg agttctgttg aatgatggaa atcttattac
2461 taccacaaga ctatttgatc tggtaattgg agacttcggg atttaggaga tctccatgtc
2521 tgtatttact ctaccactgc taaagtgtgt ggtcctgggt agtttacttg cttgcggaaa
2581 atgagaattg atggtgtccc caatgcccca cctcacagag ttactaaaaa atgtctgtaa
2641 agcatattta cctcttggga gataggcact atgtaaataa ggtaaaattt ctgttattac
2701 aattattcat aataatattc ttttcttatt tctaagcctt tctgggaaat catttcagtc
2761 cacaccaacc atattattca gggttcctgc catatgtgtg gggtatccta ctgatacaca
2821 cgtattcaaa gtttatgggt acaacaaaga catagtacat gtacataata tgtatgtgaa
2881 tatagttaaa tatatttctt cacaatattt taaactgtga agaactttat catacaggaa
2941 acttaaaaca agaggtgtca aaagacccaa attaggtgca ttttacttgt ttatgatggc
3001 ataaccattg ctttaaaatg tttagacagt agaatattga atttatgctc tatttttgtt
3061 tatttaagca acacttaatg taaaagtgca acaggcaatt gaatccaaat ttcaacgaca
3121 aaaaaaaaac gtgtatttta gagttcatct ttggcaaaat ctttggttca gggtactagt
3181 tgtttaaaag ttgattcata ttcttacctt gtgctgagaa aggttgcatt gctgcccctt
3241 atacacatgc tgcagcttga tgttaaagaa tttttattct ttctgaagaa ctaattaatg
3301 tttaaagcaa ctgtttaata tgatggcatg tgtgtgtgtg cgtgcgtgtg tatgttctga
3361 gtccacttct tttttcctaa ataacactac agggattttg tcatattaga tttaatttat
3421 aatttgaaaa atcatctagt gtgtgaccta caggcttaga aatggtatag tcaaagacat
3481 tttatccaca tttctaatag tggacttgat taagtagata agatcagcat ctgtttatgg
3541 tagtaggaga aatagccaaa gttgaggatt ttatgtatgt tttcctgttt acctggaaaa
3601 tagcaattaa ttggattttt tggtaaagat tgccttctgt ataatgtttg gattatataa
3661 aattgcaaaa atgataacag cccgctttac tgtactaagc ctgttacttt catgacgtgt
3721 gagcagaatg ccttattttg taatcttgtt taacttgttg ctactgggac ttgatttact
3781 gtggcactag ttaagtaagt taaaaaaaag ttaaaccctc tcattattaa agaggaaagg
3841 cgatggtgat gtctgtagta caatataaac cataattgtg atttacctta agtaggtata
3901 actcttatgg gatatacagt atagtttttg tgaatcttta catgatagca ttatcttttt
3961 ataatttttt ttcctaagat aaacaaatgc atagttttct tctatgggtg atagaaacag
4021 ctttttgaag taatgagaac ctcaaaagat catgttgatt cttaattttt gccttttgca
4081 taagcctctt tataacatgt atctttaaaa caattaagtc tttaggaatg tgtaaccaga
4141 actatgttag tattgcttat aaaactttag ttaggttcaa tatatacata tatacatctc
4201 tatataggta tatagatttg cattttgtct tgtaaaattt tatttgaata aattcttcct
4261 gtaggtaatg ggaaacaaaa ttaatagttc atatgtcact catagcattt ctatatttga
4321 aagtagccca atataaaact tttgattcta aaattaaacc agcagcctat tacaaaaaaa
4381 aaaaaaa
//