LOCUS BC069000 1720 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens gasdermin D, mRNA (cDNA clone MGC:78442
IMAGE:6213121), complete cds.
ACCESSION BC069000
VERSION BC069000.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1720)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1720)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: i Column: 14.
FEATURES Location/Qualifiers
source 1..1720
/db_xref="H-InvDB:HIT000263184"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78442 IMAGE:6213121"
/tissue_type="Salivary gland, epidermoid carcinoma"
/clone_lib="NIH_MGC_102"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..1720
/gene="GSDMD"
/gene_synonym="DF5L"
/gene_synonym="FKSG10"
/gene_synonym="GSDMDC1"
/db_xref="GeneID:79792"
/db_xref="HGNC:HGNC:25697"
CDS 90..1544
/gene="GSDMD"
/gene_synonym="DF5L"
/gene_synonym="FKSG10"
/gene_synonym="GSDMDC1"
/codon_start=1
/product="gasdermin D"
/protein_id="AAH69000.1"
/db_xref="GeneID:79792"
/db_xref="HGNC:HGNC:25697"
/translation="MGSAFERVVRRVVQELDHGGEFIPVTSLQSSTGFQPYCLVVRKP
SSSWFWKPRYKCVNLSIKDILEPDAAEPDVQRGRSFHFYDAMDGQIQGSVELAAPGQA
KIAGGAAVSDSSSTSMNVYSLSVDPNTWQTLLHERHLRQPEHKVLQQLRSRGDNVYVV
TEVLQTQKEVEVTRTHKREGSGRFSLPGATCLQGEGQGHLSQKKTVTIPSGSTLAFRV
AQLVIDSDLDVLLFPDKKQRTFQPPATGHKRSTSEGAWPQLPSGLSMMRCLHNFLTDG
VPAEGAFTEDFQGLRAEVETISKELELLDRELCQLLLEGLEGVLRDQLALRALEEALE
QGQSLGPVEPLDGPAGAVLECLVLSSGMLVPELAIPVVYLLGALTMLSETQHKLLAEA
LESQTLLGPLELVGSLLEQSAPWQERSTMSLPPGLLGNSWGEGAPAWVLLDECGLELG
EDTPHVCWEPQAQGRMCALYASLALLSGLSQEPH"
BASE COUNT 342 a 513 c 579 g 286 t
ORIGIN
1 ggcacctcca gctcctgctc gccggacggc tcccagggag agcagacgcg ccagacgcgc
61 caccctcggg gcgccgacgg tcacggagca tggggtcggc ctttgagcgg gtagtccgga
121 gagtggtcca ggagctggac catggtgggg agttcatccc tgtgaccagc ctgcagagct
181 ccactggctt ccagccctac tgcctggtgg ttaggaagcc ctcaagctca tggttctgga
241 aaccccgtta taagtgtgtc aacctgtcta tcaaggacat cctggagccg gatgccgcgg
301 aaccagacgt gcagcgtggc aggagcttcc acttctacga tgccatggat gggcagatac
361 agggcagcgt ggagctggca gccccaggac aggcaaagat cgcaggcggg gccgctgtgt
421 ctgacagctc cagcacctca atgaatgtgt actcgctgag tgtggaccct aacacctggc
481 agactctgct ccatgagagg cacctgcggc agccagaaca caaagtcctg cagcagctgc
541 gcagccgcgg ggacaacgtg tacgtggtga ctgaggtgct gcagacacag aaggaggtgg
601 aagtcacgcg cacccacaag cgggagggct cgggccggtt ttccctgccc ggagccacgt
661 gcttgcaggg tgagggccag ggccatctga gccagaagaa gacggtcacc atcccctcag
721 gcagcaccct cgcattccgg gtggcccagc tggttattga ctctgacttg gacgtccttc
781 tcttcccgga taagaagcag aggaccttcc agccacccgc gacaggccac aagcgttcca
841 cgagcgaagg cgcctggcca cagctgccct ctggcctctc catgatgagg tgcctccaca
901 acttcctgac agatggggtc cctgcggagg gggcgttcac tgaagacttc cagggcctac
961 gggcagaggt ggagaccatc tccaaggaac tggagctttt ggacagagag ctgtgccagc
1021 tgctgctgga gggcctggag ggggtgctgc gggaccagct ggccctgcga gccttggagg
1081 aggcgctgga gcagggccag agccttgggc cagtggagcc cctggacggt ccagcaggtg
1141 ctgtcctgga gtgcctggtg ttgtcctccg gaatgctggt gccggaactc gctatccctg
1201 ttgtctacct gctgggggca ctgaccatgc tgagtgaaac gcagcacaag ctgctggcgg
1261 aggcgctgga gtcgcagacc ctgttggggc cgctcgagct ggtgggcagc ctcttggagc
1321 agagtgcccc gtggcaggag cgcagcacca tgtccctgcc ccccgggctc ctggggaaca
1381 gctggggcga aggagcaccg gcctgggtct tgctggacga gtgtggccta gagctggggg
1441 aggacactcc ccacgtgtgc tgggagccgc aggcccaggg ccgcatgtgt gcactctacg
1501 cctccctggc actgctatca ggactgagcc aggagcccca ctagcctgtg cccgggcatg
1561 gcctggcagc tctccagcag ggcagagtgt ttgcccacca gctgctagcc ctaggaaggc
1621 caggagccca gtagccatgt ggccagtcta ccatggggcc caggagttgg ggaaacacaa
1681 taaaggtggc atacgaagga aaaaaaaaaa aaaaaaaaaa
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