LOCUS BC068992 1966 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ATG4 autophagy related 4 homolog D (S. cerevisiae),
mRNA (cDNA clone MGC:78385 IMAGE:6578102), complete cds.
ACCESSION BC068992
VERSION BC068992.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1966)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1966)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: o Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30795253.
FEATURES Location/Qualifiers
source 1..1966
/db_xref="H-InvDB:HIT000263176"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78385 IMAGE:6578102"
/tissue_type="Ovary, teratocarcinoma"
/clone_lib="NIH_MGC_109"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1966
/gene="ATG4D"
/gene_synonym="APG4-D"
/db_xref="GeneID:84971"
/db_xref="HGNC:HGNC:20789"
CDS 174..1598
/gene="ATG4D"
/gene_synonym="APG4-D"
/codon_start=1
/product="ATG4 autophagy related 4 homolog D (S.
cerevisiae)"
/protein_id="AAH68992.1"
/db_xref="GeneID:84971"
/db_xref="HGNC:HGNC:20789"
/translation="MNSVSPAAAQYRSSSPEDARRRPEARRPRGPRGPDPNGLGPSGA
SGPALGSPGAGPSEPDEVDKFKAKFLTAWNNVKYGWVVKSRTSFSKISSIHLCGRRYR
FEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLLH
FLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHRQIVSW
FADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVTRLVVYVSQD
CTVYKADVARLVARPDPTAEWKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIM
GGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPS
CTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEGHAQDHSLDDLCSQLAQP
TLRLPRTGRLLRAKRPSSEDFVFL"
BASE COUNT 347 a 646 c 616 g 357 t
ORIGIN
1 agatggcgat ggctgcggta gcagcggcgg cggctgttgc ctggcccggt accctgggga
61 cgggggccga gtagcgcctt ccccgggccc cgtgaaccgg ctgcgggtcg cccttggggg
121 gcagcggccg cagcccccca cctgggccct cggtccgccc tcccggcgcg tccatgaact
181 cagtgtcgcc ggccgccgcg cagtaccgga gcagcagccc ggaggacgcg cgccgccggc
241 ccgaggcccg caggccgcgg ggtcccagag gcccagaccc caacggcctg gggccttccg
301 gagccagcgg ccccgctctt ggctctcccg gggctggccc gagtgagccg gacgaagtgg
361 acaagttcaa ggccaagttc ctgacagcct ggaacaacgt caagtacggt tgggtggtta
421 aaagccggac cagctttagc aagatctcca gcatccacct ctgtggccgc cgctaccgtt
481 tcgagggcga gggtgacata cagcgtttcc agcgggactt tgtgtcccgc ctgtggctca
541 cataccgccg ggacttcccg ccccttcctg ggggctgcct gacctcggac tgtggctggg
601 ggtgcatgtt acgcagcggc cagatgatgc tggcacaggg ccttctgctg catttcctgc
661 ccagagactg gacatgggcc gagggcatgg gcctgggccc ccctgagctg tcagggtcag
721 cctctcccag ccggtaccat gggcctgccc gctggatgcc cccacgctgg gcccagggtg
781 cccctgagct ggagcaggaa cgccggcacc ggcagattgt gtcctggttc gccgaccacc
841 cccgggcccc ctttggccta caccggctgg tggagcttgg gcagagctca ggcaagaagg
901 caggtgactg gtatgggcca tcgctagtgg cacacatcct caggaaagcc gtggagagct
961 gctccgacgt cacccgcctg gtggtgtacg tttctcagga ctgcacagtg tacaaggcgg
1021 atgtggcacg cctggtggcc aggccagacc ccacagccga gtggaagtct gtggtcatcc
1081 tggtgcccgt gcgactgggt ggcgagactc tcaaccccgt gtatgtgccc tgcgtgaagg
1141 aactcctgcg ttgcgagctg tgcctgggca tcatgggtgg gaaaccgcga cactcactgt
1201 acttcattgg ctaccaagat gacttcctgc tgtacctgga ccctcactac tgccagccca
1261 ctgtggatgt cagccaggcc gacttccccc tggagtcctt ccactgcacc tcgccccgca
1321 agatggcctt tgccaagatg gacccaagct gtaccgtggg cttctatgct ggagacagga
1381 aggagtttga gacactctgc tcagagctga ccagggtcct cagctcctcc tcagccacag
1441 agcggtaccc catgttcacc ctggccgagg gccatgctca ggaccacagc ctggacgacc
1501 tctgctccca gctcgcccag cccacactcc ggctccctcg cacagggcgg ctcctcaggg
1561 ccaaacgccc cagctctgag gactttgtgt ttttataaag ggaggggatg aggggaaaga
1621 tacaacacta tttatttttt tatttatgtc atgtcgggtg tgggatcttg agctctggca
1681 gtgatgatgg tacttcctgt tgtcagcccc tcaagcccag ctgcaaccag tctggggcca
1741 ttcagccagg gacagagccc acagagccca tacacctgtc tcccaccagc ggggccctcc
1801 tggcagggta gggaaggagg accccgggca cccccctcag ggcctgactc acgtactgta
1861 gtttgcactg gacgcccggg ccctccctgt cccaaagccc ccttggggga actgtggctg
1921 ctgggggcca ataaagctgt gtaacttgaa aaaaaaaaaa aaaaaa
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