LOCUS BC068277 3880 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 2 open reading frame 55, mRNA (cDNA clone
MGC:42367 IMAGE:4820685), complete cds.
ACCESSION BC068277
VERSION BC068277.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3880)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3880)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: b Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46409355
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3880
/db_xref="H-InvDB:HIT000262991"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:42367 IMAGE:4820685"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3880
/gene="C2orf55"
/db_xref="GeneID:343990"
/db_xref="HGNC:HGNC:33454"
CDS 307..2130
/gene="C2orf55"
/codon_start=1
/product="C2orf55 protein"
/protein_id="AAH68277.1"
/db_xref="GeneID:343990"
/db_xref="HGNC:HGNC:33454"
/translation="MDIKLREAAEGLGEDSTGKKKSKFKTFKKFFGKKKRKESPSSTG
SSTWKQSQTRNEVIAIESGPVGYDSEDELEESRGTLGSRALSHDSIFIPESGQDATRP
VRVFSQENVCDRIKALQLKIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDGLPRSPPE
MSLLHDVGPGTTIKVSVVSPDHVSDSTVSARISDNSLAPVADFSYPAESSSCLDNSAA
KHKLQVKPRNQRSSKMRRLSSRAQSESLSDLTCTPEEEENEEKPLLEVSPEERPSSGQ
QDVAPDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPE
LAEPESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDV
ASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGP
APEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAGRQRGHRRVPA
ACRCGVSPGGARPRFPRRRGRRPGAPQGRASRGATGGRREGGARAEGGEGRCRAARRE
EVLGVLVPSAASSGRLPPAGTGQRPPAPREERPGLEERGGS"
BASE COUNT 877 a 1215 c 1222 g 566 t
ORIGIN
1 gagcgaagcc ggcgcgcctg cagctgggag ctgggagctg ggagcgcgcc gggcgcaggg
61 ccgggccggc cgcgggaggg tagtgtcagc gcccgcgtcc agctcttcgg ccgcagaccc
121 gggctgtctg gaggccgcgc ggccacctgc tgcgtcgccc cggctttggg ctggggctag
181 acgcgcaccg cggcgggagc agccccggct cgccgcaccc cgcggaaggt gcccttctct
241 gcgcgtctcg ccgagcccgg gccacgctcc tgtcccagcg agcttgacat gatttccaca
301 agggtgatgg acattaagct tcgggaggct gcagaaggcc ttggggagga cagcacagga
361 aagaaaaaat ctaaattcaa aacttttaag aagttttttg ggaagaagaa gagaaaagaa
421 tcgccgtcgt ccacaggaag tagcacctgg aaacaaagtc agacgaggaa tgaggtcatt
481 gccatcgaat ccgggccagt gggctacgac tccgaggatg agctggagga gtcgaggggc
541 acgctgggca gccgggccct ttctcacgac agtattttca ttcctgagtc cggacaggac
601 gctactcggc ctgtgcgggt gttttcccaa gaaaatgtgt gtgatcggat taaagctctg
661 cagttaaaaa tacagtgtaa tgtgaaaatg gggccaccac ctcctccagg ggggcttcct
721 gccaagcggg gagaggatgc cggcatgagc tctgaggacg acgggctgcc caggagcccc
781 ccagagatgt ctctgctgca cgacgtgggt cctggtacca ccataaaggt ctctgtcgtg
841 tctccagacc acgtgagcga cagcaccgtc tctgcccgga tctcagacaa cagcctggca
901 ccagtggctg acttcagtta tcctgcagaa tcctcctcct gcctggacaa ctctgcagct
961 aagcacaagc tccaggtcaa gccccgcaac cagcggtcga gtaagatgag gcggctctca
1021 tcgcgcgctc agtctgaatc cctgagcgac ctgacgtgca ccccagagga ggaggaaaac
1081 gaggagaagc cacttttgga agtcagccca gaagagcgcc ccagctctgg gcagcaggac
1141 gtggcgccag acagaggccc tgagcctggg ccaccggcgc ccttgccgcc acccggaggg
1201 gcccgtgcca gacgcgcccg cctgcagcac tcctccgcgc tcacggccag cgtggaggag
1261 gggggcgtcc ccggggagga cccctcaagc cgcccggcca ccccggagct cgccgagccc
1321 gagtcggccc ccactctccg cgtggagccc ccgtccccgc cggagggccc cccgaatccc
1381 ggtcccgacg gcggaaagca ggatggggag gcgccccccg caggcccgtg tgccccggcc
1441 acggacaagg cggaggaggt ggtctgtgct cccgaagacg tcgcgagccc gtttcccacc
1501 gccatccctg agggggacac gactcccccc gagactgacc ccgccgccac ctcagaggcg
1561 ccctctgctc gcgacgggcc agaacgcagt gtcccgaagg aagcggagcc gacgccgccc
1621 gtgctcccgg atgaggagaa ggggccccca gggccggcgc ctgagcccga gagagaagcg
1681 gagacggagc ccgagagagg agcggggacc gagcccgaga gaattgggac cgagccctcc
1741 acggcgcccg ccccgagccc gccggcgccc aagagctgcc tgaaacaccg gcccgcgggc
1801 cgccagcgag ggcaccgccg cgtccccgcc gcttgccgct gcggagtctc ccccggtgga
1861 gcccggcccc ggttccctcg acgcagaggc cgccgccccg gagcgcccca aggccgagcg
1921 agccgaggcg ccaccggcgg gcgccgagag ggcggcgcca gagcggaagg cggagagggg
1981 cggtgccgag ctgcgaggcg cgaagaagtt ctcggtgtcc tcgtgccgag cgcggcctcg
2041 tccgggcgtc tcccgcccgc tggaacgggc cagcggccgc ctgcccctcg cgaggagcgg
2101 cccggtctgg aggagcgagg cggctcttga cgacctccag ggtctccccg agccccagca
2161 cgcgaaacct ggccctcgga agctggcgga gcgcggccct caggactcgg gggacagggc
2221 ggccagcccg gccgggccgc gcaagagccc tcaggaggcg gccgccgcgc ccggcacgag
2281 agagccctgc ccagccgccc aggagccggc cccgagtgag gacagaaacc ccttccccgt
2341 caagctccgg tccacctccc tctcgctcaa atacagggat ggcgcctctc aggaggtgaa
2401 gggtgtgaag aggtacagtg ccgaggtccg gttagaaagg tcgctgaccg tgctcccgaa
2461 ggagggagaa gtgtcccctc gggacggccc ccgcccttcg aggcaccagg gcccccagcg
2521 accaaggaaa ggggaaggcc cggccccccg agccgctcag ctccaagccg cccctgcccc
2581 ggaagccgct tctgcagagc ttcacgctcc cgcaccagcc cgcgcccccc gacgccggcc
2641 cgggagagcg ggaacccagg aaggagccca ggacggcgga gaaaaggccg ctgcgcaggg
2701 gagctgaaaa gagtctgccg cctgcagcaa cagggcctgg agctgatggg cagcctgcgc
2761 caccctggat caccgtcact cggcagaagc ggagggggac cttggaccag ccacccaacc
2821 aggaagacaa gcctggggca cggaccctga agtctgaacc aggaaagcaa gccaaggtgc
2881 ccgagagagg ccaggagcct gtgaagcaag ctgactttgt tcgcagcaag tctttcctga
2941 taacccctgt gaagcccgct gtggaccgga agcagggggc aaagctcaac ttcaaggagg
3001 ggctgcaaag aggaatctca ttgtcccatc agaacttggc tcagtctgca gtgatgatgg
3061 agaaggaact gcatcagctg aagagagcca gttatgccag tacagatcag ccatcctgga
3121 tggaacttgc cagaaagaaa tctcaagctt ggagtgacat gccccagatt ataaaatagg
3181 tgggcagtgt gctgataaag catgtccact accctgacaa gccacttagt taaaaactgc
3241 cagtgtattg tggcaaacaa actgtgaaac ttaaagattg attttatcat caagttatga
3301 cgaacttggg gaagaggaag gaaccaggca aaacaaagag gataaacaca cagccatact
3361 cctgggccag agggcccaga aacaagaaca acattgaaaa agtccaggaa ccagttcctg
3421 tgcccaaagg tacgaatgtg tcttttcgaa ttcccttgat aaagaagcct cagacaagga
3481 agaaaataga aatgaaattg gacacataaa taggacaccc agcaaaggcc agaagagaag
3541 cccttctagg agaagggaca tctgtgcttc cagctgagat cagcccatgt ctctggtcgc
3601 tctcttgcct gtggatcctg tcttctttca tgtttactac gaggcatgac attcatggca
3661 aaacagggat gccgtttcca agagcagcta taaaacaatc tgttttccta aagacagcca
3721 ctctgagaag gagatgaagg aacacggcag ggttcatcaa ttcatagact gtttccaaaa
3781 ataattttta aacttttcca ctaggcatct gtgtctttaa ccactgcaca atgcattgcc
3841 tgtttaataa aaggtttcaa acatgaaaaa aaaaaaaaaa
//