LOCUS BC068200 1542 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens LIM and calponin homology domains 1, mRNA (cDNA clone
IMAGE:3829654), complete cds.
ACCESSION BC068200
VERSION BC068200.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1542)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1542)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 51 Row: c Column: 20
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1542
/db_xref="H-InvDB:HIT000262971"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3829654"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_58"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1542
/gene="LIMCH1"
/gene_synonym="LIMCH1A"
/gene_synonym="LMO7B"
/db_xref="GeneID:22998"
/db_xref="HGNC:HGNC:29191"
CDS 179..661
/gene="LIMCH1"
/gene_synonym="LIMCH1A"
/gene_synonym="LMO7B"
/codon_start=1
/product="LIMCH1 protein"
/protein_id="AAH68200.1"
/db_xref="GeneID:22998"
/db_xref="HGNC:HGNC:29191"
/translation="MDSERQVKVKDTDDIESPKRSIRDSGYIDCWDSERSDSLSPPRH
GRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARR
TSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTATSPLGGERPFR
"
BASE COUNT 468 a 321 c 353 g 400 t
ORIGIN
1 gggggagagc aggaatttcc cttcaaggta gcaggagatg aacgcgtgct gctccaggat
61 tttacagaac tgattctgca gcaaagacaa atgttgcctg tatttgccag atagtataaa
121 caggagcaaa agttgcacag ctaaaccagg ggctcattcc caggacagac atgcagttat
181 ggattccgaa agacaagtca aggttaagga cactgatgac attgaaagtc ctaaacgcag
241 tatccgagac agtggctaca tcgactgctg ggattccgag cgcagcgact ccctctctcc
301 tcctcgccac ggcagagatg attccttcga cagcctggat tcctttggct ctcgctctcg
361 gcagacgcct tcaccagatg tagtcctcag gggaagcagc gatgggagag gaagcgactc
421 tgaatccgac ttgcctcatc ggaagctgcc agatgtgaag aaggatgaca tgtctgcacg
481 gcggacttcc catggtgagc cgaaatcagc agtgcctttt aaccagtacc tcccgaacaa
541 aagcaatcag acggcctacg tccccgcgcc tctgagaaag aagaaagcag agagagagga
601 ataccgcaag agctggagta ccgccacctc cccgctgggt ggggagaggc ccttcaggta
661 aggcctgagc accgctgccc tcttcctggc ttgggcatga gtggtttggg aactgcagct
721 cctggacagg aacgaggtta aatgaccaat tcagaacttt gatggaagat tacagatgga
781 ggtgggtggg acagatcttt ggagagagct tgtcaggaga aaatagaagc ttcgtgagtg
841 cgcctagaac agtgcctggc acacagtagg tattcagcaa ctacttgtct aaataagcag
901 atttctgaaa ccaattctgt tgataggaca ttgagagcaa atctgtcatc cttgtccttc
961 tgcggagact gcttgactcc caatcctgtc agattaggcg tagaaagatt cctatcttta
1021 tgcaaaaaga tgttttaaaa ctctaggctt aaattaactt gatataagct caaatatgtg
1081 atgcatggaa tgtggttcac aataacatat agaaatagtc ataataaatg gatttctcat
1141 ctctttagag aaacagtgtt ttaatctctg attatgcttt tgtatttatt tattcattta
1201 ttcagcaagt acttattgag catctactat atgctaggca ttggggaccc aataacaaat
1261 aaggcagagt ccctgccttc aagaatctta caataaaata aacttgtcta atagtccatc
1321 tgtactatta ttttctattg aataaagatg ttattacaat ttttaatttg ctgaacaaac
1381 taatgaaatt tacctttcca gcagaaaagg tttttgcctt tcattatcaa gtctgggata
1441 actctcaatg ttgcgggtat gatgcattgt atgaattaaa tggctgcgtt gaattttctt
1501 cacattatca gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//