LOCUS BC068012 4283 bp mRNA linear HUM 23-AUG-2004
DEFINITION Homo sapiens ataxin 2-like, mRNA (cDNA clone IMAGE:6169527),
partial cds.
ACCESSION BC068012
VERSION BC068012.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4283)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4283)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: o Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27262646.
FEATURES Location/Qualifiers
source 1..4283
/db_xref="H-InvDB:HIT000262887"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6169527"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4283
/gene="ATXN2L"
/gene_synonym="A2D"
/gene_synonym="A2LG"
/gene_synonym="A2LP"
/gene_synonym="A2RP"
/db_xref="GeneID:11273"
/db_xref="MIM:607931"
CDS <1..3298
/gene="ATXN2L"
/gene_synonym="A2D"
/gene_synonym="A2LG"
/gene_synonym="A2LP"
/gene_synonym="A2RP"
/codon_start=2
/product="ATXN2L protein"
/protein_id="AAH68012.1"
/db_xref="GeneID:11273"
/db_xref="MIM:607931"
/translation="RGASSRRGLLSPPPTPRGSPRPPTAGPGCPIPLASRALQRGPSP
GPLSPSLLSNSPSGRCHHVEASAATTALPAPAAASPCLGPVAAAGSGLRRGAEGILAP
QPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHFLTAVVGSTCDV
KVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDTMVFKPSDVMLVHF
RNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDP
NEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLAREIESSPQYRL
RIAMENDDGRTEEEKHSAVQRQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSS
RGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPSN
RPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVS
DPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELARIAGKVPGLQNEQKRFQLE
ELRKFGAQFKLQPSSSPENSLDPFPPRILKEEPKGKEKEVDGLLTSEPMGSPVSSKTE
SVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLIKGEDKDEGPVAEQVKKSTL
NPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQI
HMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAG
PPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQA
IVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAP
SPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIH
HQQLPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQ
SGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRIREFSLAGGIWHGRAEGLQV
GQDARVLGGE"
BASE COUNT 909 a 1440 c 1114 g 820 t
ORIGIN
1 gcgcggcgct tcctcgcgcc gcggtcttct ctctccaccc ccgacaccgc ggggctcccc
61 ccgcccgccc acggcgggcc ccggctgccc gatccccctc gcttcccgcg ctctccagcg
121 gggccccagc cccggccccc tctctccctc ccttctctct aattcccctt ccggacgctg
181 ccatcatgtt gaagcctcag ccgctacaac agccctccca gccccagcag ccgcctcccc
241 ctgcctgggg cctgtggccg ctgccgggag cgggctccgc cggggagccg aaggcatctt
301 ggcgccgcag ccgccgccgc cgcagcaaca ccaggagagg ccgggggcag ccgccatcgg
361 cagcgccagg ggacagagca caggaaaggg acccccacag tcacctgtgt ttgaaggcgt
421 ctacaacaat tccagaatgc tgcatttcct tacagctgtt gtgggctcca cttgtgatgt
481 aaaggtgaaa aatggtacca cttatgaggg tatcttcaag acgctaagct caaagtttga
541 actagccgtg gatgctgtgc accggaaagc atctgagcca gcaggtggcc ctcgtcggga
601 ggacattgtg gacaccatgg tgtttaagcc aagtgatgtc atgcttgttc acttccgaaa
661 tgttgacttc aactatgcta ctaaagacaa gttcaccgat tcagccattg ccatgaactc
721 gaaagtgaat ggggaacaca aagagaaggt gcttcagcgc tgggaggggg gtgacagcaa
781 cagcgacgac tatgacctcg agtctgacat gtccaatgga tgggacccca atgaaatgtt
841 caagttcaat gaggagaact acggtgtgaa gactacctat gatagcagtc tttcttctta
901 tacggtgccc ttagaaaagg acaactcaga agagtttcgt cagcgagagc tgcgtgcggc
961 ccagttggct cgagagattg aatcaagccc ccagtaccgc ctacggatcg ccatggagaa
1021 cgacgatggg cgcactgaag aggagaagca cagtgcagtc cagcggcagg gctcagggcg
1081 ggagagcccc agcttggcat ccagggaggg gaagtatatc cctctgcctc aacgagtccg
1141 ggaaggtccc cggggaggag ttcgatgcag cagctctcgg ggcggtcggc ctggccttag
1201 ctctttgcca cctcgtggcc ctcaccatct ggacaacagc agccctggcc caggttctga
1261 ggcccgtggt atcaatggag gcccttcccg catgtcccca aaggcacagc ggcctctgag
1321 aggtgccaag actctgtctt cgcccagtaa taggccttct ggagaaactt ctgttccacc
1381 tcctcctgca gtgggccgga tgtatccccc gcgttctccc aagtctgctg cccctgcccc
1441 aatctcagct tcctgtccag agcctcccat cggctcggca gtgccaacct cttcagcctc
1501 catccctgtg acctcatcag tctcagatcc tggagtgggc tccatttctc cagcttctcc
1561 aaagatctcc ctggccccca cagatgtaaa agaactctct accaaggaac ctgggagaac
1621 tctggagccc caggagctgg ctcggatagc tgggaaagtc cctggtcttc agaatgaaca
1681 gaaacgattc caactggaag aactgagaaa gtttggggcc cagtttaagc ttcagcccag
1741 tagctcccct gagaacagcc tggatccttt tcctccccgg atcttaaagg aggagcccaa
1801 aggaaaggag aaagaggttg atggtctgtt gacttcagag cccatggggt ctcccgtctc
1861 ctccaagaca gagtccgtat cggataagga ggacaaacca cccctggcac catcaggagg
1921 cactgagggg ccagagcagc ccccaccacc ttgtccaagc caaactggca gccccccggt
1981 gggcctcatc aagggagaag acaaagatga gggccctgtt gctgaacaag taaagaaatc
2041 aacgttgaac cctaatgcta aggagttcaa tcctacaaag cctctgctgt ctgtgaataa
2101 atccaccagt accccaactt ctccggggcc ccggactcat tcaactccct ccatcccggt
2161 gctgacagca ggccagagtg ggctatacag cccccagtac atctcctaca tacctcagat
2221 ccacatggga ccagctgtgc aggcacctca gatgtatcca tatcctgtat ccaattcagt
2281 gcctgggcag cagggcaagt accggggagc aaaaggctcc cttcctccgc agcgctcgga
2341 ccaacaccag ccagcctcag ccccgccgat gatgcaggcc gccgcggctg ctggcccgcc
2401 tctggtggct gccacgccct attcttccta catcccctac aaccctcagc agttcccagg
2461 ccagccagcc atgatgcagc ccatggccca ctacccctca cagccggtgt ttgcccccat
2521 gcttcagagc aacccacgca tgctgacgtc gggcagccat ccccaggcca tcgtgtcatc
2581 ctctacccct cagtaccctt ctgcagagca gcctaccccc caagcccttt atgccactgt
2641 tcaccagtcc tacccacacc atgccacaca gctccatgcc caccagccgc agccggctac
2701 cacgcctact ggaagccagc cgcagtccca gcatgcggcc cccagtcctg tccagcatca
2761 ggcggggcag gccccacact tgggcagtgg acagccacag cagaatctgt accacccagg
2821 ggccctgaca ggcacgccgc cctctctgcc accgggacct tctgcccagt cccctcagag
2881 cagcttcccc cagccagccg ctgtgtatgc catccaccac cagcagctgc cccacggctt
2941 caccaacatg gcccatgtta cccaggccca tgtccaaact ggaatcacag cagccccgcc
3001 ccctcaccct ggggctcccc acccgcccca ggtgatgctg ctgcacccac cccagagtca
3061 tggggggccc ccccaaggcg cggtgcccca gagtggggtg cctgcactct cagcttccac
3121 accctcaccc tacccctaca tcggacaccc ccaaggtgag cagcctggcc aggcgcctgg
3181 atttccagga ggagccgatg acaggattcg tgagttctca ttagctgggg gaatttggca
3241 tggaagagct gaggggctgc aggtggggca ggatgcacgg gttctgggtg gggagtgagg
3301 ggtcttggag gcagggctgt cccacagggc gcccgccgac ctgcacctgt ctgtgaagta
3361 tgtagggtgg gcagaagcca cagtcgccgc cgccaggggc ttgctcctgg ctctgtcctt
3421 tgcttccctc cgtcctcgct cagttgtgat ccagcagccc ccctccccac tgcctcccca
3481 gctctcagtg accccgactg tctcctgact tagccgaggt aaggtcagtg cagcagacag
3541 ggccagactg gggtgtgggg ggctgagctg ggcacatgag tgagggctct ggcttactgg
3601 gaaacagcga ttgacctgtg cttctgacag cccccgagac accttgagga ggccgctcct
3661 tcccagacac acccccacgc ccccactgga cggcattgga ggaagggaca gctgcttggg
3721 ttctaatgct cctgctctct tctctttccc ctccaaccag ttcaatctca tccctcccag
3781 cagctcccct tccacccccc ggggaactga agattgtcct ggccgcgacc tgagacctcc
3841 atgagtggag ggaagagtga tctatgtctc ttcccccagc agctcggacc actcccagcc
3901 ccccatcccc ccgttcccca ggggagctgg ggaattcctg ccaagcacct tgaatgggag
3961 gggcctcaca gagggcaggg ccagggtcca gcaggggtgg ggggttcctg ctctgcccct
4021 gcccgtcccc acccagtctt gccctcccat cctctcatct attcccccgc tggagacgga
4081 agatctttta ttttctatta tttataactt cagacttggg ccccctgttc tttctttccc
4141 attaacttga gtgacctgtg tgagagacag acagatgccc cacgaggatg gctggacaag
4201 gacttttact ttttattaca taaaaatatt aaaaaataaa taaaaaaaat aaaattttaa
4261 actaacttaa aaaaaaaaaa aaa
//