LOCUS BC068000 2279 bp mRNA linear HUM 30-JUN-2004
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 7, mRNA
(cDNA clone IMAGE:6010918), partial cds.
ACCESSION BC068000
VERSION BC068000.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2279)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2279)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: a Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..2279
/db_xref="H-InvDB:HIT000262876"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6010918"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2279
/gene="CHD7"
/gene_synonym="FLJ20357"
/gene_synonym="FLJ20361"
/gene_synonym="KIAA1416"
/db_xref="GeneID:55636"
CDS 496..>2279
/gene="CHD7"
/gene_synonym="FLJ20357"
/gene_synonym="FLJ20361"
/gene_synonym="KIAA1416"
/codon_start=1
/product="CHD7 protein"
/protein_id="AAH68000.1"
/db_xref="GeneID:55636"
/translation="MSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASL
QPSLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTP
PVPQVPHGGSGGGQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQ
PQPPQPAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGN
PFIATSGPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQ
GAVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPM
NQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSP
MKAMSNPAGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQ
QSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTC
PPLQPHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQ
VSGPNAQLVKSDDYLPSIEQQPQQKKKK"
BASE COUNT 594 a 681 c 557 g 447 t
ORIGIN
1 gcggcggcgg cagcggcggc ggcggcggcg gcgcgggggt tgagtcgtgg tggtgcggac
61 gcgctcgtgc tcgggaacta tcggattaaa cttgaatcga gtgaaattac acaaaggagc
121 gccgcggagg aggcggcccg gggacccgga caccctgaaa ctcaccagag acccgttcgc
181 ccccggccaa ctccgtgccc gtggattcag ccccctggcc gcagctgccg agccaactcc
241 ggagcccgct ctgcgttttg ttttcccctc ggcactaggc agcggaggag cccgaccgac
301 ccggacctat atccagactt tgcctgacac tgcagggtcc aagagaatta aagaaatatg
361 gaatgacatg aagaagatta gttaaggatt ataggctttg agggcaaaca cctcagtgaa
421 gtgaagcaca ggcaagctcc tgagctgtgg tttggaggag ccgtgtgttg gaagaagatg
481 gcagatccag gaatgatgag tctttttggc gaggatggga atattttcag tgaaggtctt
541 gaaggcctcg gagaatgtgg ttacccggaa aatccagtaa atcctatggg tcagcaaatg
601 ccaatagacc aaggctttgc ctctttacag ccatcccttc atcatccttc aactaatcaa
661 aatcaaacaa agctgacaca ttttgatcac tataatcagt atgaacaaca aaagatgcat
721 ctgatggatc agccgaacag aatgatgagc aacacccctg ggaacggact cgcgtctccg
781 cactcgcagt atcacacccc tcccgttcct caggtgcccc atggtggcag tggtggcggt
841 cagatgggtg tctaccctgg catgcagaat gagaggcatg ggcaatcctt tgtggacagc
901 agctccatgt ggggccccag ggctgttcag gtaccagacc agatacgagc cccctaccag
961 cagcagcagc cacagccgca gccaccgcag ccggctccgt cggggccccc tgcacagggc
1021 caccctcagc acatgcagca gatgggcagc tatatggcac gtggggattt ttccatgcag
1081 cagcatggtc agccacagca gaggatgagc cagttttccc aaggccaaga gggcctcaat
1141 cagggaaatc cttttattgc cacctcagga cctggccact tgtcccacgt gccccagcag
1201 agtcccagca tggcaccttc cttgcgtcac tcggtgcagc agttccatca ccacccctct
1261 actgctctcc atggagaatc cgttgcccac agtcccagat tctccccgaa tcctccccaa
1321 caaggggctg ttaggccgca aacccttaac tttagttctc ggagccagac agtcccctct
1381 cctactataa acaactcagg gcagtattct cgatatcctt acagtaacct aaatcaggga
1441 ttagttaaca atacagggat gaatcaaaat ttaggcctta caaataatac tccaatgaat
1501 cagtccgtac caagataccc caatgctgta ggattcccat caaacagtgg tcaaggacta
1561 atgcaccagc agcccatcca ccccagtggc tcacttaacc aaatgaacac acaaactatg
1621 catccttcac agcctcaggg aacttatgcc tctccacctc ccatgtcacc catgaaagca
1681 atgagtaatc cagcaggcac tcctcctcca caagtcaggc cgggaagtgc tgggatacca
1741 atggaagttg gcagttatcc aaatatgccc catcctcagc catctcacca gccccctggt
1801 gccatgggaa tcggacagag gaatatgggc cccagaaaca tgcagcagtc tcgtccattt
1861 ataggcatgt cctcggcacc aagggaattg actgggcaca tgaggccaaa tggttgtcct
1921 ggtgttggcc ttggagaccc acaagcaatc caggaacgac tgatacctgg ccaacaacat
1981 cctggtcaac agccatcttt tcagcagttg ccaacctgtc ctccactgca gcctcacccg
2041 ggcttgcacc accagtcttc acctccacac cctcatcacc agccttgggc acagctccac
2101 ccatcacccc agaacacccc gcagaaagtg cctgtgcatc agcattcccc gtcggagccc
2161 tttctagaga aaccagtgcc ggatatgact caggttagtg gaccgaatgc tcagctagtg
2221 aagagtgatg attacctgcc atcaatagaa cagcagccac aacaaaaaaa aaaaaaaaa
//