LOCUS BC067779 2052 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens TRAF family member-associated NFKB activator, mRNA
(cDNA clone MGC:87157 IMAGE:5296558), complete cds.
ACCESSION BC067779
VERSION BC067779.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2052)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2052)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: d Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19743568.
FEATURES Location/Qualifiers
source 1..2052
/db_xref="H-InvDB:HIT000262747"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87157 IMAGE:5296558"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2052
/gene="TANK"
/gene_synonym="I-TRAF"
/db_xref="GeneID:10010"
/db_xref="MIM:603893"
CDS 101..1378
/gene="TANK"
/gene_synonym="I-TRAF"
/codon_start=1
/product="TANK protein"
/protein_id="AAH67779.1"
/db_xref="GeneID:10010"
/db_xref="MIM:603893"
/translation="MDKNIGEQLNKAYEAFRQACMDRDSAVKELQQKTENYEQRIREQ
QEQLSLQQTIIDKLKSQLLLVNSTQDNNYGCVPLLEDSETRKNNLTLDQPQDKVISGI
AREKLPKVRRQEVSSPRKETSARSLGSPLLHERGNIEKTFWDLKEEFHKICMLAKAQK
DHLSKLNIPDTATETQCSVPIQCTDKTDKQEALFKPQAKDDINRGAPSITSVTPRGLC
RDEEDTSFESLSKFNVKFPPMDNDSTFLHSTPERPGILSPATSEVVCQEKFNMEFRDN
PGNFVKTEETLFEIQGIDPIASAIQNLKTTDKTKPSNLVNTCIRTTLDRAACLPPGDH
NALYVNSFPLLDPSDAPFPSLDSPGKAIRGPQQPIWKPFPNQDSDSVVLSGTDSELHI
PRVCEFCQAVFPPSITSRGDFLRHLNSHFNGET"
BASE COUNT 723 a 372 c 370 g 587 t
ORIGIN
1 aggcgccggc gacctgaggg gagagggaac gcagctgaaa gcgtgaactg tacctgtcat
61 ttactccatc ctttatagtg atgctacagg acgaagagga atggataaaa acattggcga
121 gcaactcaat aaagcgtatg aagccttccg gcaggcatgc atggatagag attctgcagt
181 aaaagaatta cagcaaaaga ctgagaacta tgagcagaga atacgtgaac aacaggaaca
241 gctgtcactt caacagacta ttattgacaa gctaaaatct cagttacttc ttgtgaattc
301 cactcaagat aacaattatg gctgtgttcc tctgcttgaa gacagtgaaa caagaaagaa
361 taatttgact cttgatcagc cacaagataa agtgatttca ggaatagcaa gagaaaaact
421 accaaaggta agaagacaag aggtttcttc tcctagaaaa gaaacttcag caaggagtct
481 tggcagtcct ttgctccatg aaaggggtaa tatagagaag actttctggg atctgaaaga
541 agaatttcat aaaatatgca tgctagcaaa agcacagaaa gaccacttaa gcaaacttaa
601 tataccagac actgcaactg aaacacagtg ctctgtgcct atacagtgta cggataaaac
661 agataaacaa gaagcgctgt ttaagcctca ggctaaagat gatataaata gaggtgcacc
721 atccatcaca tctgtcacac caagaggact gtgcagagat gaggaagaca cctcttttga
781 atcactttct aaattcaatg tcaagtttcc acctatggac aatgactcaa ctttcttaca
841 tagcactcca gagagacccg gcatccttag tcctgccacg tctgaggtag tgtgccaaga
901 gaaatttaat atggagttca gagacaaccc agggaacttt gttaaaacag aagaaacttt
961 atttgaaatt cagggaattg accccatagc ttcagctata caaaacctta aaacaactga
1021 caaaacaaag ccctcaaatc tcgtaaacac ttgtatcagg acaactctgg atagagctgc
1081 gtgtttgcca cctggagacc ataatgcatt atatgtaaat agcttcccac ttctggaccc
1141 atctgatgca ccttttccct cactcgattc cccgggaaaa gcaatccgag gaccacagca
1201 gcccatttgg aagccctttc ctaatcaaga cagtgactcg gtggtactaa gtggcacaga
1261 ctcagaactg catatacctc gagtatgtga attctgtcaa gcagttttcc caccatccat
1321 tacatccagg ggggatttcc ttcggcatct taattcacac ttcaatggag agacttaaga
1381 cacatttgaa aacagacata tcaagttcta tgtgatgatt ttgggttttt aatactataa
1441 atacttgatt gtaaactaaa ttcaagatca tttataggaa aatctagttt cacagctatt
1501 tgaatttttt tctggattta ctatataact cttatttttt aaaagatcat tctgttcttt
1561 caaggagaaa taagcctaaa agaagaaaaa caaaaaaaat tctgtataaa actgtaatcc
1621 tttgtattca tgtttacagt gctattacta taattcaaaa ttatgtatgt gacttagagt
1681 tatataatca taatttatgt ttatttcaaa tatctaagtt tattgcttgg atttctagtg
1741 agagctgttg aatttggtga tgtcaaatgt ttctagggtt tttttagttt gtttttattg
1801 aaaaatttaa ttatttatgc tataggtgat attctctttg aataaaccta taatagaaaa
1861 tagcagacaa cataaacatc tttgtaaata tcaaacctaa tacatttctt gtccagtgat
1921 aaaacaactg gtagaattat ttaaacactt tagattttta aataatatac atggctttaa
1981 tttttactgt gtgtatagct acatgatgaa attaattaaa tattaagagg taaaaataaa
2041 aaaaaaaaaa aa
//