LOCUS BC067523 1490 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens matrix metallopeptidase 13 (collagenase 3), mRNA (cDNA
clone MGC:79423 IMAGE:7002185), complete cds.
ACCESSION BC067523
VERSION BC067523.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1490)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1490)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Narayan Bhat
cDNA Library Preparation: Bhat Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 172 Row: i Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13027796.
FEATURES Location/Qualifiers
source 1..1490
/db_xref="H-InvDB:HIT000262681"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:79423 IMAGE:7002185"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_195"
/lab_host="DH10B"
/note="Vector: pDNR-Dual"
gene 1..1490
/gene="MMP13"
/gene_synonym="CLG3"
/db_xref="GeneID:4322"
/db_xref="HGNC:HGNC:7159"
/db_xref="MIM:600108"
CDS 9..1424
/gene="MMP13"
/gene_synonym="CLG3"
/codon_start=1
/product="matrix metallopeptidase 13 (collagenase 3)"
/protein_id="AAH67523.1"
/db_xref="GeneID:4322"
/db_xref="HGNC:HGNC:7159"
/db_xref="MIM:600108"
/translation="MHPGVLAAFLFLSWTHCRALPLPSGGDEDDLSEEDLQFAERYLR
SYYHPTNLAGILKENAASSMTERLREMQSFFGLEVTGKLDDNTLDVMKKPRCGVPDVG
EYNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGI
ADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFL
VAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPK
HLKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRI
DAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTG
KTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQF
EYSIWSNRIVRVMPANSILWC"
BASE COUNT 410 a 337 c 323 g 420 t
ORIGIN
1 cattcaagat gcatccaggg gtcctggctg ccttcctctt cttgagctgg actcattgtc
61 gggccctgcc ccttcccagt ggtggtgatg aagatgattt gtctgaggaa gacctccagt
121 ttgcagagcg ctacctgaga tcatactacc atcctacaaa tctcgcggga atcctgaagg
181 agaatgcagc aagctccatg actgagaggc tccgagaaat gcagtctttc ttcggcttag
241 aggtgactgg caaacttgac gataacacct tagatgtcat gaaaaagcca agatgcgggg
301 ttcctgatgt gggtgaatac aatgttttcc ctcgaactct taaatggtcc aaaatgaatt
361 taacctacag aattgtgaat tacacccctg atatgactca ttctgaagtc gaaaaggcat
421 tcaaaaaagc cttcaaagtt tggtccgatg taactcctct gaattttacc agacttcacg
481 atggcattgc tgacatcatg atctcttttg gaattaagga gcatggcgac ttctacccat
541 ttgatgggcc ctctggcctg ctggctcatg cttttcctcc tgggccaaat tatggaggag
601 atgcccattt tgatgatgat gaaacctgga caagtagttc caaaggctac aacttgtttc
661 ttgttgctgc gcatgagttc ggccactcct taggtcttga ccactccaag gaccctggag
721 cactcatgtt tcctatctac acctacaccg gcaaaagcca ctttatgctt cctgatgacg
781 atgtacaagg gatccagtct ctctatggtc caggagatga agaccccaac cctaaacatc
841 taaaaacgcc agacaaatgt gacccttcct tatcccttga tgccattacc agtctccgag
901 gagaaacaat gatctttaaa gacagattct tctggcgcct gcatcctcag caggttgatg
961 cggagctgtt tttaacgaaa tcattttggc cagaacttcc caaccgtatt gatgctgcat
1021 atgagcaccc ttctcatgac ctcatcttca tcttcagagg tagaaaattt tgggctctta
1081 atggttatga cattctggaa ggttatccca aaaaaatatc tgaactgggt cttccaaaag
1141 aagttaagaa gataagtgca gctgttcact ttgaggatac aggcaagact ctcctgttct
1201 caggaaacca ggtctggaga tatgatgata ctaaccatat tatggataaa gactatccga
1261 gactaataga agaagacttc ccgggaattg gtgataaagt agatgctgtc tatgagaaaa
1321 atggttatat ctattttttc aacggaccca tacagtttga atacagcatc tggagtaacc
1381 gtattgttcg cgtcatgcca gcaaattcca ttttgtggtg ttaagtgtct ttttaaaaat
1441 tgttatttaa atcctgaaga gcatttgggg taatacttcc agaagtgcgg
//