LOCUS BC067083 1876 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high mobility group AT-hook 1, mRNA (cDNA clone
MGC:71296 IMAGE:4110270), complete cds.
ACCESSION BC067083
VERSION BC067083.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1876)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1876)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: c Column: 9.
FEATURES Location/Qualifiers
source 1..1876
/db_xref="H-InvDB:HIT000262418"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71296 IMAGE:4110270"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1876
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
CDS 178..501
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/codon_start=1
/product="high mobility group AT-hook 1"
/protein_id="AAH67083.1"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
/translation="MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGS
QKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQES
SEEEQ"
BASE COUNT 375 a 646 c 497 g 358 t
ORIGIN
1 ggcgcggctc caagaaggca tccgcatttg ctaccagcgg cggccgcggc ggagccaggc
61 cggtcctcag cgcccagcac cgccgctccc ggcaacccgg agcgcgcacc gcaggccggc
121 ggccgagctc gcgcatccca gccatcactc ttccacctgc tccttagaga agggaagatg
181 agtgagtcga gctcgaagtc cagccagccc ttggcctcca agcaggaaaa ggacggcact
241 gagaagcggg gccggggcag gccgcgcaag cagcctccgg tgagtcccgg gacagcgctg
301 gtagggagtc agaaggagcc cagcgaagtg ccaacaccta agagacctcg gggccgacca
361 aagggaagca aaaacaaggg tgctgccaag acccggaaaa ccaccacaac tccaggaagg
421 aaaccaaggg gcagacccaa aaaactggag aaggaggaag aggagggcat ctcgcaggag
481 tcctcggagg aggagcagtg acccatgcgt gccgcctgct cctcactgga ggagcagctt
541 ccttctggga ctggacagct ttgctccgct cccaccgccc ccgccccttc cccaggccca
601 ccatcaccac cgcctctggc cgccaccccc atcttccacc tgtgccctca ccaccacact
661 acacagcaca ccagccgctg cagggctccc atgggctgag tggggagcag ttttcccctg
721 gcctcagttc ccagctcccc ccgcccaccc acgcatacac acatgccctc ctggacaagg
781 ctaacatccc acttagccgc accctgcacc tgctgcgtcc ccactccctt ggtggtgggg
841 acattgctct ctgggctttt ggtttggggg cgccctctct gctccttcac tgttccctct
901 ggcttcccat agtggggcct gggagggttc ccctggcctt aaaaggggcc caagccccat
961 ctcatcctgg cacgccctac tccactgccc tggcagcagc aggtgtggcc aatggagggg
1021 ggtgctggcc cccaggattc ccccagccaa actgtctttg tcaccacgtg gggctcactt
1081 ttcatccttc cccaacttcc ctagtccccg tactaggttg gacagccccc ttcggctaca
1141 ggaaggcagg aggggtgagt cccctactcc ctcttcactg tggccacagc ccccttgccc
1201 tccgcctggg atctgagtac atattgtggt gatggagatg cagtcactta ttgtccaggt
1261 gaggcccaag agccctgtgg ccgccacctg aggtgggctg gggctgctcc cctaacccta
1321 ctttgcttcc gccactcagc catttccccc tcctcagatg gggcaccaat aacaaggagc
1381 tcaccctgcc cgctcccaac ccccctcctg ctcctccctg ccccccaagg ttctggttcc
1441 atttttcctc tgttcacaaa ctacctctgg acagttgtgt tgttttttgt tcaatgttcc
1501 attcttcgac atccgtcatt gctgctgcta ccagcgccaa atgttcatcc tcattgcctc
1561 ctgttctgcc cacgatcccc tcccccaaga tactctttgt ggggaagagg ggctggggca
1621 tggcaggctg ggtgaccgac taccccagtc ccagggaagg tggggccctg cccctaggat
1681 gctgcagcag agtgagcaag ggggcccgaa tcgaccataa agggtgtagg ggccacctcc
1741 tccccctgtt ctgttgggga ggggtagcca tgatttgtcc cagcctgggg ctccctctct
1801 ggtttcctat ttgcagttac ttgaataaaa aaatatcctt ttctggaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaa
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