LOCUS BC066952 1895 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens neurofilament, light polypeptide, mRNA (cDNA clone
MGC:87388 IMAGE:5264373), complete cds.
ACCESSION BC066952
VERSION BC066952.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1895)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1895)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: k Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5453761
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1895
/db_xref="H-InvDB:HIT000262372"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87388 IMAGE:5264373"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1895
/gene="NEFL"
/gene_synonym="CMT1F"
/gene_synonym="CMT2E"
/gene_synonym="NF-L"
/gene_synonym="NF68"
/gene_synonym="NFL"
/db_xref="GeneID:4747"
/db_xref="HGNC:HGNC:7739"
/db_xref="MIM:162280"
CDS 98..952
/gene="NEFL"
/gene_synonym="CMT1F"
/gene_synonym="CMT2E"
/gene_synonym="NF-L"
/gene_synonym="NF68"
/gene_synonym="NFL"
/codon_start=1
/product="NEFL protein"
/protein_id="AAH66952.1"
/db_xref="GeneID:4747"
/db_xref="HGNC:HGNC:7739"
/db_xref="MIM:162280"
/translation="MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYS
APVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFA
SFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQAL
QGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGAKNTDAVRAAKDEVSESRRL
LKAKTLEIEACRGMNEALEKQLQELEDKQNADISVMQDTINKLENELRTTKSEMARYL
KEYQDLLT"
BASE COUNT 531 a 502 c 523 g 339 t
ORIGIN
1 gcacacagcc atccatcctc ccccttccct ctctcccctg tcctctctct cagggctccc
61 accgccgccg cgggccgggg agccaccggc cgccaccatg agttccttca gctacgagcc
121 gtactactcg acctcctaca agcggcgcta cgtggagacg ccccgggtgc acatctccag
181 cgtgcgcagc ggctacagca ccgcacgctc agcttactcc agctactcgg cgccggtgtc
241 ttcctcgctg tccgtgcgcc gcagctactc ctccagctct ggatcgttga tgcccagtct
301 ggagaacctc gacctgagcc aggtagccgc catcagcaac gacctcaagt ccatccgcac
361 gcaggagaag gcgcagctcc aggacctcaa tgaccgcttc gccagcttca tcgagcgcgt
421 gcacgagctg gagcagcaga acaaggtcct ggaagccgag ctgctggtgc tgcgccagaa
481 gcactccgag ccatcccgct tccgggcgct gtacgagcag gagatccgcg acctgcgcct
541 ggcggcggaa gatgccacca acgagaagca ggcgctccag ggcgagcgcg aagggctgga
601 ggagaccctg cgcaacctgc aggcgcgcta tgaagaggag gtgctgagcc gcgaggacgc
661 cgagggccgg ctgatggaag cgcgcaaagg cgccaagaac accgacgccg tgcgcgccgc
721 caaggacgag gtgtccgaga gccgtcgtct gctcaaggcc aagaccctgg aaatcgaagc
781 atgccggggc atgaatgaag cgctggagaa gcagctgcag gagctggagg acaagcagaa
841 cgccgacatc agcgttatgc aggacacgat caacaaatta gaaaatgaat tgaggaccac
901 aaagagtgaa atggcacgat acctaaaaga ataccaagac ctcctaacgt gaagatggct
961 ttggatattg agattgcagc ttacaggaaa ctcttggaag gcgaggagac ccgactcagt
1021 ttcaccagcg tgggaagcat aaccagtggc tactcccaga gctcccaggt ctttggccga
1081 tctgcctacg gcggtttaca gaccagctcc tatctgatgt ccacccgctc cttcccgtcc
1141 tactacacca gccatgtcca agaggagcag atcgaagtgg aggaaaccat tgaggctgcc
1201 aaggctgagg aagccaagga tgagcccccc tctgaaggag aagccgagga ggaggagaag
1261 gacaaggaag aggccgagga agaggaggca gctgaagagg aagaagctgc caaggaagag
1321 tctgaagaag caaaagaaga agaagaagga ggtgaaggtg aagaaggaga ggaaaccaaa
1381 gaagctgaag aggaggagaa gaaagttgaa ggtgctgggg aggaacaagc agctaagaag
1441 aaagattgaa cccccatttc cttaattatt tcaggaataa ttctcccgaa atcaggtcaa
1501 ccccatcacc aaccaaccaa ccagttgagt tccagattct atgtgaatta aaaagtcaat
1561 atatgtataa ttctgagatg acttaggttg gacattcaat gttgtgctat gaatttcctc
1621 tttatgcaga gtatctgttt gcttgcagag tggctttctg gcttgctgcc agcctgtgca
1681 tggtccacgc ttatgagttc aggatctacg gcaatgtgaa tcattcagat gtttacaata
1741 aaaaacacca catgagtaaa tgaattcact aatgttaatg ttaaacttca tggaaaaata
1801 gtcctttgaa ccttcggtgg ttagcaatta aagaccctga gttatgtgca ataaatagta
1861 aataaagtta taccgaacga aaaaaaaaaa aaaaa
//