LOCUS BC066931 2606 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens SET domain containing 3, mRNA (cDNA clone
IMAGE:4826483), complete cds.
ACCESSION BC066931
VERSION BC066931.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2606)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2606)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: g Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40068482
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2606
/db_xref="H-InvDB:HIT000262352"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4826483"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2606
/gene="SETD3"
/gene_synonym="FLJ23027"
/db_xref="GeneID:84193"
/db_xref="HGNC:HGNC:20493"
CDS 72..950
/gene="SETD3"
/gene_synonym="FLJ23027"
/codon_start=1
/product="SETD3 protein"
/protein_id="AAH66931.1"
/db_xref="GeneID:84193"
/db_xref="HGNC:HGNC:20493"
/translation="MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPG
KEWEEYVQIRTLVEKIRKKQKGLSVTFDGKREDYFPDLMKWASENGASVEGFEMVNFK
EEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFH
LLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYA
YFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDM
CNHTNGLVTTSSPVLC"
BASE COUNT 727 a 555 c 540 g 784 t
ORIGIN
1 gatgcggacg gcggggtccg ggccggagta cgtcgttccc gctgcgctag gggaagcggg
61 cagtcagaaa aatgggtaag aagagtcgag taaaaactca gaaatctggc actggtgcta
121 cagcaactgt gtcaccaaag gaaatcttga acctgaccag tgagctgctg cagaaatgca
181 gcagtccggc gcctggccca ggaaaagagt gggaagagta tgtgcagatc cggactctgg
241 ttgagaaaat acggaaaaag caaaaaggtc tgtccgttac ttttgatgga aaaagagaag
301 attactttcc tgatctaatg aaatgggcct ctgaaaatgg ggcttctgtc gagggttttg
361 aaatggttaa cttcaaagaa gagggctttg gtttgagagc aacaagagat atcaaggcag
421 aagaattgtt tttatgggtt ccacgaaaat tgctaatgac tgttgaatct gctaaaaatt
481 cagtgttggg gcccttatat tctcaagacc gaatccttca agccatggga aacatcgcac
541 tggcctttca tttgctgtgt gagcgagcca gccctaactc cttctggcag ccctatattc
601 aaaccctccc cagtgaatat gacactcctc tctactttga agaagatgaa gttcggtatc
661 ttcagtccac acaagctata catgatgtct tcagccagta taaaaacaca gctcgacagt
721 acgcctactt ctataaagtc atccagaccc atcctcatgc caacaaacta cccttgaagg
781 attctttcac ttacgaggac tacaggtggg cagtctcttc tgttatgacg aggcaaaacc
841 aaattcccac agaggatggt tcccgcgtga ccctggctct gattccttta tgggatatgt
901 gtaaccacac caacggcctg gtaacgacct cttcccctgt gttgtgttga atctgggagg
961 ctgttgttgc taagctttgg gagggggctg ttattccacc tacccatcgt actccccccg
1021 ttgcctccct ccaaaaggaa caaacaaaac cgaaccggcc actcctcccc accgcccaca
1081 gatagaagct ggtatttttc ttttactgca ttgactaata ctgaaaactg ggagcttgaa
1141 tcttatacca ttttcaaaag ccacagtgaa ctacatgtgt ttgctaagcc ataattccag
1201 cctcaacatt cattttctta tcttattgta ccacagacta aaccaaagtt tctttttact
1261 tattctcttt aaaatgctca tttattgggg aaaaaaaatc atatttctca ttttcccttt
1321 tgtgtcttct tttctttgct gacactctgt ttccagttct gtacctttga ttctttcttg
1381 tccccggtcc cttcccctga tgggctgacg aatccctggc catgtttatg aacctgtgtt
1441 tgttacttgc tttccctggt gctgtggggc gggaggaggg ggctcatgcc ttgggctcct
1501 cgcccttgac tgcaggagtc agctggcatc atcatacctg ggaagcctgg ggaggaggaa
1561 gttgtattat tatggtcccc cacagctggg aagaggtgga ggcaggctct gtttctccac
1621 attcttcgga ttccgggcag cagcataggt gaagcgctct gtgctctgtg agagggttgt
1681 ctgataaaga tttcctgata ttagtaggca gaaataagat acatttcaga tcattttgaa
1741 atatcatact ttatactagt atactgtttg attaggtttt atgttcatct tttctctgtc
1801 agctttcctt gttattagca gtattataaa tagaataaag aaatgccgtg aatgattatt
1861 tcacattgaa ttccctggaa tggccagaac acacgtagtg tgcgccagac actgaagaca
1921 gaatatccta gtgctaattt gggaaggtct agcaacaagt atgttcttga atcttaaaag
1981 tatttaaatt gtggcaagaa agaatagttc catttttata attacatttt ggccttaatt
2041 tagatatggt taatttaatt agtaatgaat actaaaacat aatagcatgt tttataactt
2101 attttcatta atgaatataa ttttacattt tttgttttgt ttttcttcag agttatttta
2161 aattgacggt aagcttgaaa tttaagaaat cttcaaatag cttttaatat ctgactgtag
2221 tgtttttctt cttctttttt tgaatgagat catttgttcc caaactcaat tgattattag
2281 agttcttttt aataaaatta aagcaataat gcttggcttt actctaaaca aacaaaaaga
2341 attaacccag gaacctctgt agcaaggtga gcagtgccct acccccagcc ccacagtcca
2401 cctgatggtg ttgaggccgc caccaggcca ccgtggtccc tagcgaagct tccatccatt
2461 ggcacctcac acactcatct gcacattggt ttttgtttag cttccatgta aatgggataa
2521 aacaattcct ttttccctac caagtgttaa aaaaaaaaga ggtttatctc aaaataaaga
2581 aattgatgac aaaaaaaaaa aaaaaa
//