LOCUS BC066909 2081 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ankyrin repeat domain 54, mRNA (cDNA clone MGC:87097
IMAGE:4795922), complete cds.
ACCESSION BC066909
VERSION BC066909.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2081)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2081)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: c Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20270346.
FEATURES Location/Qualifiers
source 1..2081
/db_xref="H-InvDB:HIT000262330"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87097 IMAGE:4795922"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2081
/gene="ANKRD54"
/db_xref="GeneID:129138"
/db_xref="HGNC:HGNC:25185"
CDS 76..978
/gene="ANKRD54"
/codon_start=1
/product="ankyrin repeat domain 54"
/protein_id="AAH66909.1"
/db_xref="GeneID:129138"
/db_xref="HGNC:HGNC:25185"
/translation="MAAAAGDADDEPRSGHSSSEGECAVAPEPLTDAEGLFSFADFGS
ALGGGGAGLSGRASGGAQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHWRLG
PTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQ
LLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKS
KLNILQEGHAQCLEAVRLEVKQIIHMLREYLERLGQHEQRERLDDLCTRLQMTSTKEQ
VDEVTDLLASFTSLSLQMQSMEKR"
BASE COUNT 452 a 608 c 623 g 398 t
ORIGIN
1 agggcggagg gaagtaggtc cgttggtcgg tcgggaacga ggctcaggcg accaggcccg
61 cgcggagccg ttgccatggc agccgccgcc ggggacgcgg acgacgagcc gcgctcaggc
121 cactcgagct cggagggcga gtgcgcggtg gcgccggagc cgctgactga cgctgagggc
181 ctcttctcct tcgctgactt cgggtctgcg ctgggcggcg gcggcgcggg cctctcgggc
241 cgggcgtccg gcggggccca gtcgccgctg cgctacttgc acgtcctgtg gcagcaggat
301 gcggagccgc gcgacgagct gcgctgcaag atacccgctg gccggctgag gcgcgctgcc
361 aggccccact ggcggctcgg gcccacgggc aaggaggtgc acgctctgaa gagactgagg
421 gactcggcca atgccaatga tgtggaaaca gtgcagcagc tgctggaaga tggcgcggat
481 ccctgtgcag ctgatgacaa gggccgcaca gctctacact ttgcctcatg caatggcaat
541 gaccagattg tgcagctgct cctggaccat ggtgctgatc ctaaccagcg agatgggctg
601 gggaacacgc cactgcacct ggcggcctgc accaaccacg ttcctgtcat caccacactg
661 ctacgaggag gggcccgtgt agatgccctg gaccgagctg gtcgcacacc cctgcacctg
721 gccaagtcaa agctgaatat cctgcaggag ggccatgccc agtgcctaga ggctgtgcgt
781 ctggaggtga agcagatcat ccatatgctg agggagtatc tggagcgcct agggcaacat
841 gagcagcgag aacgcctgga tgacctctgc acccgcctgc agatgaccag taccaaagag
901 caggtggatg aagtgactga cctcctggcc agcttcacct ccctcagtct gcagatgcag
961 agcatggaga agaggtagca agagaggctc cctgccttcc tgccactgcc ccaccctgcc
1021 ccactgctgt ctcagtacca agaaaaagcc caacatctgg gacttggagc tgcacttgtc
1081 tggtgaggac cttgccctca cccgcagatg ccgtggggca gagatgctct ctctccacgg
1141 cctcagagcc actcccagcc acagtttcca gcatctctgt ggacagggac cacagctccc
1201 agcttcttcc agttctcgca gcaccagacc agcctctaca gctgcacttc agctccgcag
1261 acctgcgcta tctcagcaga cctcacttgc cccatggcct tcatggcgcg ctccaggcct
1321 cagacccttc tctgtgttcc gtcctggcca tgggcttgtt gcagtcagca ggtgtgggct
1381 taggcgggca ccctgtggcc aggggtactg cgtgaggccc tcagttggtc ctgtgcctct
1441 caccagcact tagacagaca cgtcaccaga ctttcaagga gatactgcag tgagtttctc
1501 tggttggaag gggagggttg gtgagtccca gaccttaaaa atacaaggtt aagagggacc
1561 ccaaagcaaa aaattccaac cattttcctc ccagtcattg aaacaccaaa actattatac
1621 cggagggtgt aatagttttg ctgcccagtt gtggtaggcc agtagtggcc tcccaagatg
1681 ccaatgtcct aatcccagga acctgtcaaa attaccttgt atggccaaag gggctttgca
1741 gatgtaatga agttaaggat ctttcgccag gaagattatc ccagcttgtt caggagggct
1801 tgatgtcctc acccgggtct gtataacaga agagcaggtg acgggagatg aggttggagg
1861 tgtagcgatg gagcaggaaa ctggagttga ggagggcagc tcaagccaca gagtccaggc
1921 cacctcagag ccaggaaatg catcctccca cagagccctg gaaggcccca gccctgctcc
1981 cacctggact ggctcagtga ggctaatttt ataattatgg ctgattttag aactctaagg
2041 gaataaattt gtgttgtttt aagccaaaaa aaaaaaaaaa a
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