LOCUS BC065917 1590 bp mRNA linear HUM 24-FEB-2004
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member
12, mRNA (cDNA clone IMAGE:5752160), partial cds.
ACCESSION BC065917
VERSION BC065917.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1590)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1590)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: m Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22749432.
FEATURES Location/Qualifiers
source 1..1590
/db_xref="H-InvDB:HIT000262095"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5752160"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1590
/gene="SLC39A12"
/gene_synonym="FLJ30499"
/db_xref="GeneID:221074"
CDS 18..>1590
/gene="SLC39A12"
/gene_synonym="FLJ30499"
/codon_start=1
/product="SLC39A12 protein"
/protein_id="AAH65917.1"
/db_xref="GeneID:221074"
/translation="MCFRTKLSVSWVPLFLLLSRVFSTETDKPSAQDSRGRGSSGQPA
DLLQVLSAGDHPPHNHSRSLIKTLLEKTGCPRRRNGMQGDCNLCFEPDALLLIAGGNF
EDQLREEVVQRVSLLLLYYIIHQEEICSSKLNMSNKEYKFYLHSLLSLRQDEDSSFLS
QNETEDILAFTRQYFDTSQSQCMETKTLQKKSGIVSSEGANESTLPQLAAMIITLSLQ
GVCLGQGNLPSPDYFTEYIFSSLNRTNTLRLSELDQLLNTLWTRSTCIKNEKIHQFQR
KQNNIITHDQDYSNFSSSMEKESEDGPISWDQTCFSARQLVEIFLQKGLSLISKEDFK
QMSPGIIQQLLSCSCHLPKDQQAKLPPTTLEKYGYSTVAVTLLTLGSMLGTALVLFHS
CEENYRLILQLFVGLAVGTLSGDALLHLIPQVLGLHKQEAPEFGHFHESKGHIWKLMG
LIGGIHGFFLIEKCFILLVSPNDKQGLSLVNGHVGHSHHLALNSELSDQAGRGKSAST
IQLKSPEDSQAAEMPI"
misc_feature 1107..1484
/gene="SLC39A12"
/gene_synonym="FLJ30499"
/note="Zip; Region: ZIP Zinc transporter. The ZIP family
consists of zinc transport proteins and many putative
metal transporters. The main contribution to this family
is from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although this
protein in not found within this family"
/db_xref="CDD:pfam02535"
BASE COUNT 449 a 385 c 350 g 406 t
ORIGIN
1 gtggaggaag cgtggaaatg tgcttccgga caaagctctc agtatcctgg gtgccattgt
61 ttcttctact cagccgtgtt ttttctactg agacagacaa accctcagcc caggacagca
121 gaggccgtgg gagttcaggc caaccggcag acctgctaca ggttctctct gctggtgacc
181 acccacccca caaccactca agaagcctca tcaaaacatt gttggagaaa actgggtgcc
241 cacggaggag aaacggaatg caaggagatt gcaatctgtg ctttgaacca gatgcactat
301 tactaatagc tggaggaaat tttgaagatc agcttagaga agaagtggtc cagagagttt
361 ctcttctcct tctctattac attattcatc aggaagagat ctgttcttca aagctcaaca
421 tgagtaataa agagtataaa ttttacctac acagcctact gagcctcagg caggatgaag
481 attcctcttt cctttcacag aatgagacag aagatatctt ggctttcacc aggcagtact
541 ttgacacttc tcaaagccag tgtatggaaa ccaaaacgct gcagaaaaaa tctggaatag
601 tgagcagtga aggtgctaat gaaagtacgc ttcctcagtt ggcagccatg atcattactt
661 tgtccctcca gggtgtttgt ctgggacaag gaaacttgcc ttccccagac tactttacag
721 aatatatttt cagttccttg aatcgtacga ataccctccg cctatcagaa ctagaccaac
781 tcctcaacac tctctggacc agaagtactt gtatcaaaaa tgagaaaatc catcaatttc
841 aaaggaaaca aaacaacata ataacccatg atcaggacta ttctaatttc tcttcatcca
901 tggaaaaaga gtctgaggat ggtccaattt cctgggatca gacctgcttc tctgctaggc
961 agctggtgga gatatttcta cagaagggcc tctcactcat ttctaaggag gactttaagc
1021 aaatgagtcc agggatcatc cagcagctcc tcagctgctc ctgccactta cccaaggacc
1081 aacaagcaaa gctgccacct accactctgg agaaatacgg ctacagcacg gtggctgtca
1141 cccttctcac actgggctcc atgctgggga cagcgctggt ccttttccat agctgtgagg
1201 agaactacag gcttatctta cagctgtttg tgggcttggc cgtcgggaca ctgtctgggg
1261 acgctctgct ccaccttatc cctcaggttc ttggtttaca taagcaggaa gccccagaat
1321 ttgggcattt ccatgaaagc aaaggtcata tttggaaact gatgggatta attggaggca
1381 tccatggatt tttcttgata gaaaaatgtt ttattcttct tgtatcacca aatgacaagc
1441 agggcctgtc attggttaat gggcacgtgg gtcattccca ccatcttgca ctcaactctg
1501 aattaagtga ccaggcaggc agaggcaaat ctgcttcaac tatccagttg aaaagcccag
1561 aagattcaca ggcagctgaa atgcctatag
//