LOCUS BC065831 1500 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens SIX homeobox 6, mRNA (cDNA clone IMAGE:30366326),
partial cds.
ACCESSION BC065831
VERSION BC065831.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1500)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1500)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6677978.
FEATURES Location/Qualifiers
source 1..1500
/db_xref="H-InvDB:HIT000262071"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30366326"
/tissue_type="Pituitary"
/clone_lib="NIH_MGC_179"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene <1..1500
/gene="SIX6"
/gene_synonym="MCOPCT2"
/gene_synonym="Six9"
/db_xref="GeneID:4990"
/db_xref="HGNC:HGNC:10892"
/db_xref="MIM:606326"
CDS <1..920
/gene="SIX6"
/gene_synonym="MCOPCT2"
/gene_synonym="Six9"
/codon_start=3
/product="SIX6 protein"
/protein_id="AAH65831.1"
/db_xref="GeneID:4990"
/db_xref="HGNC:HGNC:10892"
/db_xref="MIM:606326"
/translation="PPVGVVRSRPLSHRRHPVVCPAAPIRLINKRLAHSARPAGICCV
SRSGLSALAAAGTASMFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAA
CEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEK
LRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKR
ELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLG
VATSPAASLSSKAATSAISITSSDSECDI"
BASE COUNT 353 a 456 c 412 g 279 t
ORIGIN
1 ctcctccagt cggggtcgtc cgctcccggc cgttgagcca ccgccgccac ccggtagtgt
61 gtcccgctgc cccaatccgc ctcatcaaca agcgcctggc acactcagcc aggcccgcgg
121 gcatctgctg cgtgtcccgc tccgggctca gtgccctcgc cgccgccggc actgcctcga
181 tgttccagct gcccatcttg aatttcagcc cccagcaagt ggccggggta tgtgagaccc
241 tggaagagag cggcgatgtg gagcgcctgg gtcgcttcct ctggtcgctg cccgtggccc
301 ctgcggcctg cgaggccctc aacaagaatg agtcggtgct acgcgcacga gccatcgtgg
361 cctttcacgg tggcaactac cgcgagctct atcatatcct ggaaaaccac aagttcacca
421 aggagtcgca cgccaagctg caggcgctgt ggcttgaagc acactaccag gaggctgaga
481 agctgcgtgg aagacccctg ggacctgtgg acaagtaccg agtaaggaag aagttcccgc
541 tgccgcgcac catttgggac ggcgaacaga agacacactg cttcaaggag cgcacgcggc
601 acctgctacg cgagtggtac ctgcaggatc cataccctaa ccccagcaaa aaacgtgagc
661 tcgcccaggc aaccggactg acccctacgc aggtgggcaa ctggttcaaa aaccgccgac
721 aaagggaccg agcggctgca gccaagaaca gactccagca gcaggtcctg tcacagggtt
781 ccgggcgggc actacgggcg gagggcgacg gcacgccaga ggtgctgggc gtcgccacca
841 gcccggccgc cagtctatcc agcaaggcgg ccacttcagc catctccatc acgtccagcg
901 acagcgagtg cgacatctga gttgcccatc caggatgctc agaagcagat tccagtgtaa
961 aaacgagaaa aacaaaatga aagaggggaa gaagatgaga gacctgcaaa tccagcgcca
1021 cagaagccag gtgaccaggg acccgcgggc tcgggttgcc gtttcccgcc ccaccccgcg
1081 gccggcctgg cttcactggc gccctttggc cgcgaccacg ggaaccagcg gtgaggcctg
1141 acccagcacc acgttcttct tgctttgctt tttcctaagg attttgctgc aaagtctcct
1201 tcggaacccg aactgcaagc tgagcgcctg cccagattct cccatgggta tttcacgtcg
1261 aaaggacgct gttacatatg tataactttc gctttaaagt ttttttttaa caaaacatat
1321 atatgctgtt tatttactta tttaagagac cgccatggta ggtttctctg tagcttgggg
1381 aacttgctgt ttctaaacat gcaggctggt ggtgatgggt tctgtgtgga gaagccaaac
1441 aataaaacaa cctagtgggc aaccttctta attaaaaaaa aaaaaaaaaa aaaaaaaaaa
//