LOCUS BC065526 2675 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens spermatogenesis associated 20, mRNA (cDNA clone
MGC:70686 IMAGE:6149633), complete cds.
ACCESSION BC065526
VERSION BC065526.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2675)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2675)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: k Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542722.
FEATURES Location/Qualifiers
source 1..2675
/db_xref="H-InvDB:HIT000261933"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70686 IMAGE:6149633"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2675
/gene="SPATA20"
/gene_synonym="FLJ21347"
/gene_synonym="FLJ21969"
/gene_synonym="SSP411"
/gene_synonym="Tisp78"
/db_xref="GeneID:64847"
CDS 243..2471
/gene="SPATA20"
/gene_synonym="FLJ21347"
/gene_synonym="FLJ21969"
/gene_synonym="SSP411"
/gene_synonym="Tisp78"
/codon_start=1
/product="SPATA20 protein"
/protein_id="AAH65526.1"
/db_xref="GeneID:64847"
/translation="MPAGGKGSHPSSTPQRVPNRLIHEKSPYLLQHAYNPVDWYPWGE
EAFDKARKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLSEDFVSVKVDREERPD
VDKVYMTFVQATSSGGGWPMNVWLTPNLQPFVGGTYFPPEDGLTRVGFRTVLLRIREQ
WKQNKNTLLENSQRVTTALLARSEISVGDRQLPPSAATVNNRCFQQLDEGYDEEYGGF
AEAPKFPTPVILSFLFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIRDHVGQGFHRY
STDRQWHVPHFEKMLYDQAQLAVAYSQAFQLSGDEFYSDVAKGILQYVARSLSHRSGG
FYSAEDADSPPERGQRPKEGAYYVWTVKEVQQLLPEPVLGATEPLTSGQLLMKHYGLT
EAGNISPSQDPKGELQGQNVLTVRYSLELTAARFGLDVEAVRTLLNTGLEKLFQARKH
RPKPHLDSKMLAAWNGLMVSGYAVTGAVLGQDRLINYATNGAKFLKRHMFDVASGRLM
RTCYTGPGGTVEHSNPPCWGFLEDYAFVVRGLLDLYEASQESAWLEWALRLQDTQDRL
FWDSQGGGYFCSEAELGAGLPLRLKDDQDGAEPSANSVSAHNLLRLHGFTGHKDWMDK
CVCLLTAFSERMRRVPVALPEMVRALSAQQQTLKQIVICGDRQAKDTKALVQCVHSVY
IPNKVLILADGDPSSFLSRQLPFLSTLRRLEDQATAYVCENQACSVPITDPCELRKLL
HP"
BASE COUNT 538 a 827 c 799 g 511 t
ORIGIN
1 agcagccatg ctgggcgcgc gggcctggtt gggccgcgtc cttctgctgc cccgcgccgg
61 tgcaggcctc gccgcgagcc gcaggtctgc ctgcagtccc acttccaggc tgaactccct
121 gaggtctctg attccctagg tgtcctggag tctggcccag gacctggccc cacaggagtc
181 ccagcagggg tagctcctcc cgggacaagg accgaagtgc gacggtcagt agttcagtgc
241 ccatgcctgc tggagggaaa ggaagccatc cttcatctac accccagagg gtccccaacc
301 gcctgatcca cgagaagtca ccatacctcc tacaacatgc ctacaatcct gtggactggt
361 acccctgggg agaggaagcc ttcgacaagg ccaggaagga aaacaagccg attttcctct
421 cagtcgggta ctccacctgc cactggtgcc acatgatgga agaggagtcc ttccagaatg
481 aggagattgg ccgcctgctc agtgaggact ttgtgagtgt gaaggtagac cgtgaggagc
541 ggcctgacgt ggacaaggtg tacatgacgt tcgtgcaggc caccagcagc ggcgggggct
601 ggcccatgaa tgtgtggctg actcccaacc tccagccctt tgtcgggggc acctatttcc
661 ctcctgagga tggcttgacc cgagtcggct tccgcacagt gttgctgaga atacgagaac
721 agtggaaaca gaacaagaac accctgctag aaaatagcca gcgtgtcacc actgccctgc
781 tggcccgatc agagatcagc gtgggtgacc gccagctgcc gccctctgcc gccaccgtga
841 acaatcgctg cttccagcag ctggatgagg gctatgatga ggaatacggt ggcttcgctg
901 aggcccccaa gtttcccacg ccggtgatcc tgagcttcct gttctcctac tggctcagcc
961 atcgactgac tcaggatggc tctcgggccc agcagatggc cttgcatacc ctgaaaatga
1021 tggctaacgg gggcatccgg gaccatgtgg ggcagggctt tcaccgctac tccacagacc
1081 gccagtggca cgtccctcac tttgagaaga tgctctatga ccaggcacag ctcgctgtgg
1141 cctattcgca ggccttccag ctctctggtg atgaattcta ctctgacgtg gccaaaggca
1201 tcctgcagta cgtggctcgg agcctgagcc accggtccgg aggcttctat agcgcagagg
1261 atgcagactc gcccccagag cggggccagc ggcccaaaga gggcgcctac tatgtgtgga
1321 cggtcaaaga ggttcagcag ctcctcccgg agcctgtgtt gggtgccacc gagccgctga
1381 cctcaggcca gctcctcatg aagcactacg gcctcacaga ggctggtaac atcagcccca
1441 gtcaggaccc caagggggag ctgcagggcc agaatgtgct gaccgtccgg tactcgctgg
1501 agctgactgc tgcccgcttt ggcttggatg tggaggccgt gcggaccttg ctcaatacag
1561 ggctggagaa gctcttccag gcccggaagc atcggcccaa gccgcacctg gacagcaaga
1621 tgctggctgc ctggaatggc ttgatggtgt caggctatgc tgtgactggg gctgtcctgg
1681 gccaagacag gctgatcaac tatgccacca atggtgccaa gttcctgaag cggcacatgt
1741 ttgatgtggc cagtggccgc ctgatgcgga cctgctacac cggccctggg gggactgtgg
1801 agcacagcaa cccaccctgc tggggcttcc tggaggacta cgccttcgtg gtgcggggcc
1861 tgctggacct gtatgaggcc tcacaggaga gtgcgtggct cgagtgggct ctgcggctgc
1921 aggacacaca ggacaggctc ttttgggact cccagggtgg cggctacttc tgcagtgagg
1981 ctgagctggg ggctggcctg cccctgcgtc tgaaggacga ccaggatgga gcagagccca
2041 gcgccaattc cgtgtcagcc cacaacctgc tccggctgca tggcttcacg ggccacaagg
2101 actggatgga caagtgtgtg tgcctattga ccgccttttc cgagcgcatg cgtcgtgtcc
2161 cggtggcgtt gcccgagatg gtccgcgccc tctcagccca gcagcagacc ctcaagcaga
2221 tcgtgatctg tggagaccgt caggccaagg acaccaaggc cctggtgcag tgcgtccact
2281 ctgtctacat tcctaacaag gtgctgattc tggctgatgg ggacccctcg agcttcctgt
2341 cccgccagct gcctttcctg agtaccctcc gacggttgga agaccaggcc actgcatatg
2401 tgtgtgagaa tcaagcctgc tcagtgccca tcactgatcc ctgcgaatta cgaaaactac
2461 tacatccatg actgccccaa cccccttggg gtggggcaga aggtgaagca tcccaactga
2521 ctagagactc aggccctgca gggccctata gaacctgtgg ccatccctga gcaccctgcc
2581 accaggtgac ctcggccata ctcactgccc cccttgggca cccactcacc ctagaataaa
2641 cttaacagtg tcccgtggta aaaaaaaaaa aaaaa
//