LOCUS BC064840 4084 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens histone deacetylase 7, mRNA (cDNA clone MGC:74915
IMAGE:6179239), complete cds.
ACCESSION BC064840
VERSION BC064840.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4084)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4084)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13259523.
FEATURES Location/Qualifiers
source 1..4084
/db_xref="H-InvDB:HIT000261597"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74915 IMAGE:6179239"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4084
/gene="HDAC7"
/gene_synonym="DKFZP586J0917"
/gene_synonym="HD7A"
/db_xref="GeneID:51564"
/db_xref="HGNC:HGNC:14067"
/db_xref="MIM:606542"
CDS 90..2954
/gene="HDAC7"
/gene_synonym="DKFZP586J0917"
/gene_synonym="HD7A"
/codon_start=1
/product="HDAC7 protein"
/protein_id="AAH64840.1"
/db_xref="GeneID:51564"
/db_xref="HGNC:HGNC:14067"
/db_xref="MIM:606542"
/translation="MHSPGADGTQVSPGAHYCSPTGAGCPRPCADTPGPQPQPMDLRV
GQRPPVEPPPEPTLLALQRPQRLHHHLFLAGLQQQRSVEPMRLSMDTPMPELQVGPQE
QELRQLLHKDKSKRSAVASSVVKQKLAEVILKKQQAALERTVHPNSPGIPYRTLEPLE
TEGATRSMLSSFLPPVPSLPSDPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPLLRK
ESAPPSLRRRPAETLGDSSPSSSSTPASGCSSPNDSEHGPNPILGSEADSDRRTHPTL
GPRGPILGSPHTPLFLPHGLEPEAGGTLPSRLQPILLLDPSGSHAPLLTVPGLGPLPF
HFAQSLMTTERLSGSGLHWPLSRTRSEPLPPSATAPPPPGPMQPRLEQLKTHVQVIKR
SAKPSEKPRLRQIPSAEDLETDGGGPGQVVDDGLEHRELGHGQPEARGPAPLQQHPQV
LLWEQQRLAGRLPRGSTGDTVLLPLAQGGHRPLSRAQSSPAAPASLSAPEPASQARVL
SSSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQC
ECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVG
VDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFC
FFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFF
PGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLV
SAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEA
CVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRLASCPDSWVPRV
PGADKEEVEAVTALASLSVGILAEDRPSEQLVEEEEPMNL"
BASE COUNT 798 a 1341 c 1206 g 739 t
ORIGIN
1 cagcctccgg cgactggggg gatgtgaggc cggcgcccca gccccccgcc ccgccatgag
61 ccccccgctc tgagggcccc ggcccctgga tgcacagccc cggcgctgat gggacccagg
121 tgagcccggg tgcccactac tgcagcccca ctggcgcagg ctgccccagg ccctgtgcag
181 acacaccagg ccctcagccg cagcccatgg acctgcgggt gggccagcgg cccccagtgg
241 agcccccacc agagcccaca ttgctggccc tgcagcgtcc ccagcgcctg caccaccacc
301 tcttcctagc aggcctgcag cagcagcgct cggtggagcc catgaggctc tccatggaca
361 cgccgatgcc cgagttgcag gtgggacccc aggaacaaga gctgcggcag cttctccaca
421 aggacaagag caagcgaagt gctgtagcca gcagcgtggt caagcagaag ctagcggagg
481 tgattctgaa aaaacagcag gcggccctag aaagaacagt ccatcccaac agccccggca
541 ttccctacag aaccctggag cccctggaga cggaaggagc cacccgctcc atgctcagca
601 gctttttgcc tcctgttccc agcctgccca gtgacccccc agagcacttc cctctgcgca
661 agacagtctc tgagcccaac ctgaagctgc gctataagcc caagaagtcc ctggagcgga
721 ggaagaatcc actgctccga aaggagagtg cgccccccag cctccggcgg cggcccgcag
781 agaccctcgg agactcctcc ccaagtagta gcagcacgcc cgcatcaggg tgcagctccc
841 ccaatgacag cgagcacggc cccaatccca tcctgggctc ggaggctgac agtgaccgca
901 ggacccatcc gactctgggc cctcgggggc caatcctggg gagcccccac actcccctct
961 tcctgcccca tggcttggag cccgaggctg ggggcacctt gccctctcgc ctgcagccca
1021 ttctcctcct ggacccctca ggctctcatg ccccgctgct gactgtgccc gggcttgggc
1081 ccttgccctt ccactttgcc cagtccttaa tgaccaccga gcggctctct gggtcaggcc
1141 tccactggcc actgagccgg actcgctcag agcccctgcc ccccagtgcc accgctcccc
1201 caccgccggg ccccatgcag ccccgcctgg agcagctcaa aactcacgtc caggtgatca
1261 agaggtcagc caagccgagt gagaagcccc ggctgcggca gataccctcg gctgaagacc
1321 tggagacaga tggcggggga ccgggccagg tggtggacga tggcctggag cacagggagc
1381 tgggccatgg gcagcctgag gccagaggcc ccgctcctct ccagcagcac cctcaggtgt
1441 tgctctggga acagcagcga ctggctgggc ggctcccccg gggcagcacc ggggacactg
1501 tgctgcttcc tctggcccag ggtgggcacc ggcctctgtc ccgggctcag tcttccccag
1561 ccgcacctgc ctcactgtca gccccagagc ctgccagcca ggcccgagtc ctctccagct
1621 cagagacccc tgccaggacc ctgcccttca ccacagggct gatctatgac tcggtcatgc
1681 tgaagcacca gtgctcctgc ggtgacaaca gcaggcaccc ggagcacgcc ggccgcatcc
1741 agagcatctg gtcccggctg caggagcggg ggctccggag ccagtgtgag tgtctccgag
1801 gccggaaggc ctccctggaa gagctgcagt cggtccactc tgagcggcac gtgctcctct
1861 acggcaccaa cccgctcagc cgcctcaaac tggacaacgg gaagctggca gggctcctgg
1921 cacagcggat gtttgtgatg ctgccctgtg gtggggttgg ggtggacact gacaccatct
1981 ggaatgagct tcattcctcc aatgcagccc gctgggccgc tggcagtgtc actgacctcg
2041 ccttcaaagt ggcttctcgt gagctaaaga atggtttcgc tgtggtgcgg cccccaggac
2101 accatgcaga tcattcaaca gccatgggct tctgcttctt caactcagtg gccatcgcct
2161 gccggcagct gcaacagcag agcaaggcca gcaagatcct cattgtagac tgggacgtgc
2221 accatggcaa cggcacccag caaaccttct accaagaccc cagtgtgctc tacatctccc
2281 tgcatcgcca tgacgacggc aacttcttcc cggggagtgg ggctgtggat gaggtagggg
2341 ctggcagcgg tgagggcttc aatgtcaatg tggcctgggc tggaggtctg gaccccccca
2401 tgggggatcc tgagtacctg gctgctttca ggatagtcgt gatgcccatc gcccgagagt
2461 tctctccaga cctagtcctg gtgtctgctg gatttgatgc tgctgagggt cacccggccc
2521 cactgggtgg ctaccatgtt tctgccaaat gttttggata catgacgcag caactgatga
2581 acctggcagg aggcgcagtg gtgctggcct tggagggtgg ccatgacctc acagccatct
2641 gtgacgcctc tgaggcctgt gtggctgctc ttctgggtaa cagggtggat cccctttcag
2701 aagaaggctg gaaacagaaa cccaacctca atgccatccg ctctctggag gccgtgatcc
2761 gggtgcacag taaatactgg ggctgcatgc agcgcctggc ctcctgtcca gactcctggg
2821 tgcctagagt gccaggggct gacaaagaag aagtggaggc agtgaccgca ctggcgtccc
2881 tctctgtggg catcctggct gaagataggc cctcggagca gctggtggag gaggaagaac
2941 ctatgaatct ctaaggctct ggaaccatct gcccgcccac catgcccttg ggacctggtt
3001 ctcttctaac ccctggcaat agcccccatt cctgggtctt tagagatcct gtgggcaagt
3061 agttggaacc agagaacagc ctgcctgctt tgacagttat cccagggagc gtgagaaaat
3121 ccctgggtct agaatgggaa ctggagagga ccctgagagg agacgggctg ggcggcgacc
3181 cccacagggc tctcgagaac agattctccc ctccagtatg ggccctggct gtggccccca
3241 ttcctcagga ctgcacagag gaggactggc tccggctccg tcgggctcac ccttaaccac
3301 tattcctggc tctgcaaacc ccagactttg cacacagccc caggctccac acagaaatgt
3361 gaacttggcc tcagacaggc tggcccttcc taggctctag gggctagggg ggagtgggga
3421 gccaagaggt cccatattcc tgagtgcagg ggtagtccct ctcacctgct tcctcagacg
3481 actctggaag cttccctcta ccaccgggca ctgagacgaa gctccctgac agccgagact
3541 ggcagccctc catctggtcc gtaccctcgc cagaggcccc cctacatcaa cctcctggcg
3601 atgccctggt ggagcagatg ggtgctctgg gagtcctgtg cttcctgatc caatggtgcc
3661 aaacccttca tctcccccag aagcgcagca tacccctggg acccctcggc cactgcccac
3721 tcggggagcc ttctctgttt ctggggcctc ccccaccata gctctgattc ccaccccaca
3781 taggaatagc ctgactgagg gggaaggggt gggagagaag atacagacat ggaggagggg
3841 aggctgctct ggcaaagtct tcaaggcttt tgggggtcca ggcctggggt caagaaggaa
3901 aatgtgtgtg agcatgtgtg tgagtgaggc gtgtgtgtga gcgtgtgtgt gagtgaggcg
3961 tgtgtgtgtg tctttcctag gacccaccat accctgtgta tgtatgcatg tttttgtaaa
4021 aaggaagaaa atggaaaaaa atctgaacaa taaatgtttt atttgcttta aaaaaaaaaa
4081 aaaa
//