LOCUS BC063861 4021 bp mRNA linear HUM 06-APR-2004
DEFINITION Homo sapiens ankyrin repeat and IBR domain containing 1, mRNA (cDNA
clone IMAGE:6469676), partial cds.
ACCESSION BC063861
VERSION BC063861.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4021)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4021)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: h Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..4021
/db_xref="H-InvDB:HIT000261237"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6469676"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4021
/gene="ANKIB1"
/gene_synonym="DKFZP434A0225"
/gene_synonym="KIAA1386"
/db_xref="GeneID:54467"
CDS <1..3622
/gene="ANKIB1"
/gene_synonym="DKFZP434A0225"
/gene_synonym="KIAA1386"
/codon_start=2
/product="ANKIB1 protein"
/protein_id="AAH63861.1"
/db_xref="GeneID:54467"
/translation="APTQSEPRRGRLRLTQRFPRAASAHPRPHQPPPGGCTRAGEEGA
TVRVGGAGWVPEVTSSAVEAGAAEAELRSCWVHRPLPSAREVTNVKDVAEVFQKWLKI
EGKKCHCLSEKTKQNMGNTTTKFRKALINGDENLACQIYENNPQLKESLDPNTSYGEP
YQHNTPLHYAARHGMNKILGTFLGRDGNPNKRNVHNETSMHLLCMGPQIMISEGALHP
RLARPTEDDFRRADCLQMILKWKGAKLDQGEYERAAIDAVDNKKNTPLHYAAASGMKA
CVELLVKHGGDLFAENENKDTPCDCAEKQHHKDLALNLESQMVFSRDPEAEEIEAEYA
ALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHDWDREKLLEAWMS
NPENCCQRSGVQMPTPPPSGYNAWDTLPSPRTPRTTRSSVTSPDEISLSPGDLDTSLC
DICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQEGEAHNIFCPAYDCFQLVPVDI
IESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTPGCDRAVRLTKQGSNTSGSDTLSFP
LLRAPAVDCGKGHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAA
NCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGGYYRC
TRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRFKNHEHSYQLEQRLLKTAK
EKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFE
LMQTDLEMVTEDLAQKVNRPYLRTPRHKIIKAACLVQQKRQEFLASVARGVAPADSPE
APRRSFAGGTWDWEYLGFASPEEYAEFQYRRRHRQRRRGDVHSLLSNPPDPDEPSEST
LDIPEGGSSSRRPGTSVVSSASMSVLHSSSLRDYTPASRSENQDSLQALSSLDEDDPN
ILLAIQLSLQESGLALDEETRDFLSNEASLGAIGTSLPSRLDSVPRNTDSPRAALSSS
ELLELGDSLMRLGAENDPFSTDTLSSHPLSEARSDFCPSSSDPDSAGQDPNINDNLLG
NIMAWFHDMNPQSIALIPPATTEISADSQLPCIKDGSEGVKDVELVLPEDSMFEDASV
SEGRGTQIEENPLEENILAGEAASQAGDSGNEAANRGDGSDVSSQTPQTSSDWLEQVH
LV"
misc_feature 491..943
/gene="ANKIB1"
/gene_synonym="DKFZP434A0225"
/gene_synonym="KIAA1386"
/note="ANK; Region: ankyrin repeats"
/db_xref="CDD:cd00204"
misc_feature 1556..1786
/gene="ANKIB1"
/gene_synonym="DKFZP434A0225"
/gene_synonym="KIAA1386"
/note="IBR; Region: IBR domain. The IBR (In Between Ring
fingers) domain is found to occur between pairs of ring
fingers (pfam00097). The function of this domain is
unknown. This domain has also been called the C6HC domain
and DRIL (for double RING finger linked) domain"
/db_xref="CDD:pfam01485"
misc_feature 1853..2029
/gene="ANKIB1"
/gene_synonym="DKFZP434A0225"
/gene_synonym="KIAA1386"
/note="IBR; Region: In Between Ring fingers"
/db_xref="CDD:smart00647"
BASE COUNT 1213 a 891 c 940 g 977 t
ORIGIN
1 ggcgcccacc cagtctgagc ctcgccgcgg gcgccttcgg ctcacgcagc gcttcccgcg
61 ggccgccagt gcgcaccctc ggccacatca gcctccgcct ggcgggtgca cccgggccgg
121 cgaggaaggg gcaaccgtcc gggtgggtgg ggcgggctgg gtacctgagg tcaccagctc
181 ggctgtagag gcaggggcgg cggaggcgga actgcggagt tgctgggtcc accgaccctt
241 accctcagcg agagaagtaa ccaatgtgaa agatgttgca gaagtgttcc agaagtggct
301 gaagatagaa ggaaaaaagt gccactgcct atcagaaaaa acaaaacaaa acatgggaaa
361 tacaaccacc aaattccgta aagcactcat caatggtgat gaaaacctgg cctgccaaat
421 atatgaaaac aatcctcagc taaaagaatc tcttgatcca aatacatctt atggggagcc
481 ctaccagcac aatactccat tacattatgc tgctagacat ggaatgaata aaatattagg
541 gacttttctt ggtagagatg gaaatccaaa taaacggaat gtgcacaatg aaacatctat
601 gcatttgttg tgtatgggac ctcaaattat gatatctgaa ggagcccttc atcctcgctt
661 ggcacgcccc acagaagatg atttcagaag agcagattgt ctgcagatga tcttaaaatg
721 gaaaggagca aaacttgacc agggtgaata tgagagagca gctattgatg ctgttgataa
781 caaaaaaaac acacccttgc actatgctgc tgcctcaggg atgaaagcct gtgtagagct
841 tttagtaaaa catggaggag acttgtttgc tgagaatgaa aataaagata ctccttgtga
901 ttgtgctgaa aagcaacacc acaaagattt ggccctcaat ctggaatctc aaatggtatt
961 ctcacgggat cccgaggctg aagaaataga agctgaatat gctgcattag acaaacgaga
1021 gccatatgaa ggattaaggc ctcaggatct tcgtagacta aaagatatgc ttattgtgga
1081 aactgcagac atgcttcagg ctcctctctt tactgctgaa gctttacttc gagctcatga
1141 ctgggacagg gagaaattac ttgaagcttg gatgtccaac ccggagaact gctgccaacg
1201 atcaggtgtt caaatgccaa ctccaccacc aagtgggtat aatgcctggg acacgctccc
1261 atctccaaga actccaagga ctacacgctc ttctgtcacc tccccagatg aaatcagctt
1321 atctcctggg gatttagaca ccagtttgtg tgacatttgt atgtgcagta tctctgtatt
1381 tgaagaccct gtggatatgc cctgtggaca tgacttttgt agaggatgtt gggagtcgtt
1441 tttgaatctg aaaattcaag aaggtgaagc tcacaacatt ttttgccctg catatgattg
1501 cttccaactt gtacctgtgg atatcataga aagtgtagtt tcaaaggaga tggacaaacg
1561 atacctacag tttgatatta aggcctttgt tgaaaataat cctgccatta aatggtgtcc
1621 tactccaggc tgtgacagag cagtaagact aacgaaacaa gggtcaaata catctggatc
1681 tgatacactc agcttcccat tgctgagagc tcctgctgtt gattgtggaa aaggacacct
1741 cttctgctgg gagtgccttg gtgaagcaca tgagccttgt gactgccaaa catggaagaa
1801 ttggctgcaa aaaataaccg aaatgaaacc agaagaactt gtgggagtta gtgaagccta
1861 cgaggatgcc gccaattgtc tctggttatt aactaactcc aagccttgtg ccaactgtaa
1921 gtctccaata cagaagaatg aaggctgcaa tcacatgcag tgtgctaagt gcaagtatga
1981 cttttgctgg atttgccttg aagagtggaa aaaacatagt tcgtccactg gaggttatta
2041 cagatgtact cgctatgaag tcattcaaca cgtggaggag caatccaagg aaatgactgt
2101 ggaggctgag aaaaaacaca aacgatttca ggaacttgac agatttatgc actattatac
2161 aagatttaaa aaccatgagc atagttatca gctagaacaa cgccttctta aaacagccaa
2221 agaaaagatg gagcaattga gcagagctct caaagaaact gaaggaggct gtccagatac
2281 cactttcatt gaagatgcag ttcatgtgct cttaaaaact cggcgcattc tcaagtgttc
2341 ttatccatat ggatttttct tggaacctaa aagcacaaag aaagaaattt ttgaactaat
2401 gcaaacagac ctagaaatgg tcactgaaga ccttgcccag aaagtcaata ggccttacct
2461 tcgcacaccc cgccacaaga tcatcaaagc agcatgcctt gtacagcaga agaggcaaga
2521 attcctggca tctgtggctc ggggagtagc tcctgcagac tcaccagaag ctccaaggcg
2581 cagctttgct ggtggaacat gggattggga atatttagga tttgcatcac cagaggaata
2641 tgctgaattt cagtatcgga ggaggcacag acaacgtcgt cgaggagatg ttcacagtct
2701 actcagtaat cctccagacc ctgatgagcc aagtgaaagc actttagata ttccagaagg
2761 cggcagcagc agccgcaggc ctggcacatc cgtggtaagt tctgcatcta tgagtgtgct
2821 gcacagctct tccctgcgtg actacacccc tgccagtcgc tctgaaaacc aggactctct
2881 tcaggctctg agttccttgg atgaagacga tcccaatata cttcttgcaa tacagttatc
2941 actgcaagag tctgggctgg ccctcgatga agaaactaga gacttcctca gtaatgaagc
3001 atccttaggt gcgataggca cttctttacc ttccaggctg gactctgtcc ccagaaatac
3061 agatagccct cgggctgcat tgagcagctc tgagcttttg gaacttggtg acagcctcat
3121 gagactagga gcagagaatg acccattttc aactgacacc ctgagctcac accctctcag
3181 tgaggcaaga agtgatttct gtccctcatc tagtgatcct gactcagctg gccaggaccc
3241 caacatcaat gacaatcttc tcggcaacat catggcttgg tttcatgaca tgaaccctca
3301 gagtattgcc ctgattcctc cagcaactac agaaatcagt gcagattccc agctcccctg
3361 tatcaaagat gggtcagaag gtgtgaagga tgtggaactg gtgctgccag aagattcaat
3421 gtttgaagat gccagtgtca gtgaaggtag aggaacccag atagaagaaa atcctttgga
3481 agaaaatatt ctggcggggg aagcagcatc tcaagctggt gacagtggta acgaggcagc
3541 caacagagga gatggttcag atgtttcaag tcaaacacct caaacctcaa gtgactggct
3601 tgaacaagta catttagtgt gaactgcaca catctgggct ctaaatgaat tacaggtaca
3661 gatggtatgc taggtggagt atgcttgata gagactttga ttcacttaat tccaactcag
3721 tgataaacca ctgacattag ggttgaatac agagaagttc ccttgaatgg tagcttcatt
3781 ttttatttta accttacagg gaatttcctt tgtacttaat tgaatagctt ttcccctttt
3841 tgctgacaaa aagaagagca agagaaagag aaacaaaaat gaaataaata agttgtattc
3901 cacactctaa gaaaatgcag tcctctattt agcctaggct tgacaatact taaattgaac
3961 atttaaacta aaggcttact ccctaatctt tgggtggctt tcctttaaaa aaaaaaaaaa
4021 a
//