LOCUS BC063855 4356 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens activating transcription factor 7 interacting protein,
mRNA (cDNA clone MGC:75187 IMAGE:6181437), complete cds.
ACCESSION BC063855
VERSION BC063855.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4356)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4356)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: c Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..4356
/db_xref="H-InvDB:HIT000261231"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75187 IMAGE:6181437"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4356
/gene="ATF7IP"
/gene_synonym="FLJ10139"
/gene_synonym="FLJ10688"
/gene_synonym="MCAF"
/gene_synonym="p621"
/db_xref="GeneID:55729"
CDS 143..3460
/gene="ATF7IP"
/gene_synonym="FLJ10139"
/gene_synonym="FLJ10688"
/gene_synonym="MCAF"
/gene_synonym="p621"
/codon_start=1
/product="ATF7IP protein"
/protein_id="AAH63855.1"
/db_xref="GeneID:55729"
/translation="MDSLEEPQKKVFKARKTMRVSDRQQLEAVYKVKEELLKTDVKLL
NGNHENGDLDPTSPLENMDYIKDKEEVNGIEEICFDPEGSKAEWKETPCILSVNVKNK
QDDDLNCEPLSPHNITPEPVSKLPAEPVSGDPAPGDLDAGDPASGVLASGDSTSGDPT
SSEPSSSDAASGDATSGDAPSGDVSPGDATSGDATADDLSSGDPTSSDPIPGEPVPVE
PISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGDLSSSELASDDLATGELAS
DELTSESTFDRTFEPKSVPVCEPVPEIDNIEPSSNKDDDFLEKNGADEKLEQIQSKDS
LDEKNKADNNIDANEETLETDDTTICSDRPPENEKKVEEDIITELALGEDAISSSMEI
DQGEKNEDETSADLVETINENVIEDNKSENILENTDSMETDEIIPILEKLAPSEDELT
CFSKTSLLPIDETNPDLEEKMESSFGSPSKQESSESLPKEAFLVLSDEEDISGEKDES
EVISQNETCSPEVESNEKDNRPEEEEQVIHEDDERPSEKNEFSRRKRSKSEDMDNVQS
KRRRYMEEEYEAEFQVKITAKGDINQKLQKVIQWLLEEKLCALQCAVFDKTLAELKTR
VEKIECNKRHKTVLTELQAKIARLTKRFEAAKEDLKKRHEHPPNPPVSPGKTVNDVNS
NNNMSYRNAGTVRQMLESKRNVSESAPPSFQTPVNTVSSTNLVTPPAVVSSQPKLQTP
VTSGSLTATSVLPAPNTATVVATTQVPSGNPQPTISLQPLPVILHVPVAVSSQPQLLQ
SHPGTLVTNQPSGNVEFISVQSPPTVSGLTKNPVSLPSLPNPTKPNNVPSVPSPSIQR
NPTASAAPLGTTLAVQAVPTAHSIVQATRTSLPTVGPSGLYSPSTNRGPIQMKIPISA
FSTSSAAEQNSNTTPRIENQTNKTIDASVSKKAADSTSQCGKATGSDSSGVIDLTMDD
EESGASQDPKKLNHTPVSTMSSSQPVSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLP
TAPTTVNVTHRPVTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQV
NPQNSKRFFLYMAPRYM"
BASE COUNT 1446 a 892 c 876 g 1142 t
ORIGIN
1 ggcggcggcg gtggcagcgg cggcgcggcg actgaagcgc gcgaaaagct gaggcggcaa
61 cgtcggggac ggctgcgcgg gacggctctg taggaaggaa cttggttccc cctccctcag
121 cttccgcccc aaaagattca gaatggacag tttagaagaa cctcagaaaa aagtctttaa
181 ggctcgaaaa acgatgagag tgagtgatcg tcagcaactt gaagcagtgt acaaggtcaa
241 agaagaactg ttgaaaactg atgtcaagct gttaaatggc aaccatgaaa atggagattt
301 ggacccaacc tcacctttgg aaaacatgga ttacattaaa gacaaggaag aggtgaatgg
361 cattgaagag atttgttttg atcctgaagg aagtaaagca gaatggaagg aaacaccctg
421 tatcctaagt gttaatgtaa aaaacaagca ggatgatgat ttaaattgtg aacctttgtc
481 tccccataat ataactccag aaccagtctc taaactgcct gctgaaccag tttctggtga
541 tccagcccct ggtgatctgg atgccggaga tccagcctcc ggagtactgg cctctggtga
601 ttccacctct ggtgatccca cctctagcga gccctcctct agtgatgctg cctctggtga
661 tgcaacctct ggtgatgccc cttctggtga tgtgtcccct ggtgatgcca cctctggtga
721 tgccactgct gatgatctct cctctggtga tcccacctct agtgatccca tcccaggtga
781 accggtccct gttgaaccca tttctggtga ttgtgccgct gatgatatag cctctagtga
841 aataacttct gttgatctgg cttctggagc accagcttcc actgatccag cctctgatga
901 tctggcctct ggtgatctat cctctagtga actggcctct gatgatctgg ccactggtga
961 actggcctct gatgagctga cttctgaatc aacctttgat cgtacctttg aaccaaagtc
1021 tgtaccagtt tgtgaaccag ttcctgaaat tgacaatata gaaccaagta gcaataaaga
1081 tgatgatttt cttgaaaaaa atggagctga tgaaaaatta gagcaaattc agagtaaaga
1141 ctcattggat gagaaaaata aagctgataa taatattgat gctaatgaag aaactctaga
1201 aacagatgat acaactattt gttcagatcg acctcctgaa aatgaaaaga aggtagagga
1261 agatattatc acagagcttg ctcttggaga agatgctata tctagcagta tggaaattga
1321 ccaaggtgaa aagaatgaag atgaaacttc tgcagatctt gtagaaacga ttaatgaaaa
1381 tgttattgaa gataacaaaa gtgagaatat cttagaaaat acagactcta tggagacaga
1441 tgaaatcatt cctattttgg aaaagcttgc accttctgag gatgaactta cttgcttttc
1501 taaaacatct ctccttccaa tcgatgagac aaatccagat ttggaagaga aaatggaaag
1561 ttcttttggt tcaccatcta aacaagaaag tagtgagagt ttgccaaaag aagcctttct
1621 ggtcctctct gatgaagagg atatttcggg tgaaaaagat gagtctgaag ttatatcgca
1681 aaatgaaacg tgctctccag aagtagaaag taatgaaaag gacaacagac ctgaggaaga
1741 agagcaagta atacatgaag atgatgaaag accttctgag aaaaatgaat tttctagacg
1801 aaaacgttct aaatcagaag acatggacaa tgtacagtct aaacgtcgtc gatatatgga
1861 agaagaatat gaggcagaat ttcaagtaaa gattacagcc aaaggagaca ttaaccagaa
1921 acttcaaaag gttatacagt ggttgctgga agaaaaattg tgtgcgctgc agtgtgctgt
1981 atttgataag actttggcag aattgaaaac acgagtggaa aagattgaat gtaacaagag
2041 gcataaaaca gttctcactg aactacaggc caagatagcc aggttaacca aacgctttga
2101 agcagccaaa gaagatctta agaaaagaca tgaacatcca cccaacccac cagtatcacc
2161 aggaaaaact gtaaatgatg tcaacagcaa taataacatg tcttacagaa atgcaggcac
2221 agtgagacag atgctggagt ccaaaagaaa tgtaagcgag agtgcaccac catcctttca
2281 aactcctgtg aatacagtat cttcaaccaa tcttgtcact cctccagcag ttgtcagtag
2341 tcaacctaaa ttgcagactc cagtgacttc gggttccctc acagcaacgt cagttcttcc
2401 tgcacccaat acagctactg tagttgctac tactcaggtg cctagtggaa atccccagcc
2461 tacaatctct ttacagcctt tgccagtgat tttgcatgta cctgttgcag tatcctccca
2521 gcctcagctt ctacagagcc atccagggac tttggtgact aatcaaccat ctggcaatgt
2581 tgaattcatt tctgtgcaaa gcccacctac agtgagtggt cttaccaaaa atccagtatc
2641 cttgccatcc ttgccaaatc ccactaaacc aaacaacgtt ccttctgtgc ccagtcctag
2701 tattcaaagg aaccctactg ccagtgctgc accattggga acaacacttg ctgtgcaggc
2761 tgttccaaca gcacactcta ttgtacaagc cacaaggact tctttaccca cagtgggccc
2821 atcaggactc tatagtccat caactaatcg aggtcctata cagatgaaaa ttccaatttc
2881 tgcatttagt acttcgtctg ctgcagaaca gaacagcaat accaccccaa gaattgaaaa
2941 ccagacaaac aaaacaatag atgcttctgt cagtaagaaa gcagctgata gcacatcaca
3001 gtgtggaaaa gccactggca gtgattcaag tggtgtcatt gatctcacaa tggatgatga
3061 agagagtgga gcttcacaag accccaaaaa actaaatcac actcctgtat caaccatgag
3121 ttcttctcag cctgtgtcac gaccattgca acccatacaa ccagcaccgc ctcttcaacc
3181 atctggggtg ccaacaagtg gaccatctca gaccaccata cacttactac ctacagctcc
3241 aactaccgtg aatgtaacac atcgtccagt aactcaggtg accacaagac tccctgtacc
3301 aagagctcct gcaaaccacc aggtggttta tacaactctt cctgcaccac cagctcaggc
3361 tcccttgcga ggaactgtta tgcaggctcc tgctgttcgg caggtcaatc cccaaaatag
3421 taagagattt ttcttgtata tggccccaag atacatgtag ttctcttcag catttagttg
3481 gaatggcata taataatgtt aaattttgca aaaatttctt ataatgtcat attaaaagta
3541 ttgttataag ttcaagagat ctgtactaca acatagaaac tatagtatag ttaaaatcaa
3601 tgtagtatat tcttgaaaat agctgataga gcagatttta agtattgtca ccacacacaa
3661 aaaaggtaag tatgtgagat catgcatatg tcagttagct agatttagcc attctgcagt
3721 gtatgcatat ttcaaacatg ttgtatacca taaatatata taatttttgt caattaaaaa
3781 atagttttca aaaaagaaat ggcagtataa ccaaaactaa tctattatta tttttcttcc
3841 cttaggagag ttaaacagag aaaattgttg atgtatacta gttgatttgt gctctgagtg
3901 ttgtctttaa tttaacttta tttatggcct gtattagtat agtacacaat ttgatattgg
3961 tatattctct actctattaa gaaacacctt acctagttag agtgggaatg gtcaattgtg
4021 atttacccca gatgatggaa atcatggtaa aggatagcct tcaatgagag tcttaaagat
4081 atggaaagtg gctgagaaaa gaagggaaaa tgttaaagaa agcttgtagt ttcttgtata
4141 tatcatatat tagttacata catatgttac atgcatgtta catatgtaga tgacatttta
4201 aaattatata ttaaccacat gtatataagc agtagtagaa tatatcacat aaacacaagc
4261 ttatataaaa ggtatattta aactttaaag taaagaaaaa taataaaatg aactacgtat
4321 gaactcttaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//