LOCUS BC063839 3323 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sphingosine-1-phosphate phosphatase 1, mRNA (cDNA
clone MGC:74883 IMAGE:6184825), complete cds.
ACCESSION BC063839
VERSION BC063839.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3323)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3323)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: d Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254975.
FEATURES Location/Qualifiers
source 1..3323
/db_xref="H-InvDB:HIT000261215"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74883 IMAGE:6184825"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3323
/gene="SGPP1"
/gene_synonym="SPPase1"
/db_xref="GeneID:81537"
/db_xref="HGNC:HGNC:17720"
CDS 95..1420
/gene="SGPP1"
/gene_synonym="SPPase1"
/codon_start=1
/product="sphingosine-1-phosphate phosphatase 1"
/protein_id="AAH63839.1"
/db_xref="GeneID:81537"
/db_xref="HGNC:HGNC:17720"
/translation="MSLRQRLAQLVGRLQDPQKVARFQRLCGVEAPPRRSADRREDEK
AEAPLAGDPRLRGRQPGAPGGPQPPGSDRNQCPAKPDGGGAPNGVRNGLAAELGPASP
RRAGALRRNSLTGEEGQLARVSNWPLYCLFCFGTELGNELFYILFFPFWIWNLDPLVG
RRLVVIWVLVMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPIS
MVLLTYGRWQYPLIYGLILIPCWCSLVCLSRIYMGMHSILDIIAGFLYTILILAVFYP
FVDLIDNFNQTHKYAPFIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSH
VTYNMGLVLDPSLDTLPLAGPPITVTLFGKAILRILIGMVFVLIIRDVMKKITIPLAC
KIFNIPCDDIRKARQHMEVELPYRYITYGMVGFSITFFVPYIFFFIGIS"
BASE COUNT 905 a 638 c 699 g 1081 t
ORIGIN
1 gcgctgtgcc ggttccgctg ccgctggcca ggagcgcggg gacagttcgg ggctgcgccg
61 gaggccggcc cgccttcccg ggggttccgt tatcatgtcg ctgaggcagc gcctggccca
121 gctggttggc cgtctgcagg acccgcagaa agtggcccgt ttccagcggc tgtgcggggt
181 ggaagcgccg ccgcgccgct cagcagaccg gagggaggat gagaaagcgg aggcgcctct
241 cgccggagac cctcgactgc gagggcggca gccaggggcg cctggaggcc cccagcctcc
301 cgggagcgac cgcaatcagt gcccggccaa gccggacggc ggcggcgccc ccaacggcgt
361 gcggaacggg ctggcggccg agctgggccc ggcctcgccg cggcgcgcgg gcgctctgcg
421 ccgcaactcg ctgacgggcg aggagggcca gctggcccgc gtgagcaact ggccgctcta
481 ctgcctgttc tgcttcggca cggagctggg caacgaactc ttctacatcc tgttcttccc
541 cttctggatc tggaacctgg accctctggt gggccggagg ctcgtggtca tctgggtgct
601 ggtcatgtac ctgggccagt gcaccaagga catcatccgc tggccgaggc ccgcctcgcc
661 gcccgtggtc aagttggagg tcttctacaa ctctgagtac agcatgccct ccacccatgc
721 catgtccggc accgccatcc ccatttctat ggtcctcctc acctatggcc gctggcagta
781 ccctcttata tatggactga ttcttattcc ctgctggtgt tctctagttt gcctaagtag
841 aatttacatg ggaatgcact ctattctgga tattattgct ggattcctat ataccatttt
901 aatcttagct gtcttctatc catttgtgga cctgattgac aacttcaacc aaactcacaa
961 atatgctcca ttcatcatca tcgggcttca tttagctttg gggatctttt ctttcactct
1021 tgacacctgg agcacatccc gaggagacac agccgagata ctaggaagtg gtgctggaat
1081 tgcatgtgga tctcatgtta cttataacat gggtctagta ttagatcctt ctctagatac
1141 attaccttta gctgggcccc ccattactgt gactctgttt ggaaaagcca tattgcggat
1201 cctcataggg atggtatttg tactaataat cagagatgta atgaaaaaga tcaccattcc
1261 tttagcctgc aaaatcttca atataccgtg tgatgatatt cgaaaagcaa gacagcacat
1321 ggaagttgaa cttccttatc ggtatattac ctatggaatg gttggtttct ccatcacatt
1381 ttttgttcct tacatatttt tctttattgg tatctcttga tggagaagta ttgtttatga
1441 taagaaagga gggtatcagt tactgatacc caaaaatata ttccaggtaa agccaggtca
1501 gaattaggct tttgcaggaa tttaacttaa ataattattt aagtaaattc ataagagtca
1561 gtgcatttta tcattgcaca tccagatact gttttaggtg agctgagcta tttcgttact
1621 gagaaaatga taagtatcca tttagaatgt tcatgtaatg tttggagagt tttgtattat
1681 ggattcaact tatatataat atatataagg tacataatat gcaattatgt atctgatata
1741 tattatatat aaaataatat acctaagtgt ttttttaaac tatgggagtg tattataaaa
1801 tcaataataa tatgcaaaca gttgtgcctg tgtatttgaa ctacatacag gtatgttgtt
1861 attaacagat atatttaaca tttatttact atgggagcca tttcctaatt gaattgcgta
1921 attactagac cagaatgcat atgctactat acattgattt actgcctgtt tttacactgc
1981 cattaccttt catgttatcc atgatgttga acatgggagg catttttaat ggaccaaatt
2041 tttagaaaaa ttagtttttg gatttttttt taagttctgt atactgtttt gaatgaactt
2101 tatttgcagc tattctggat gtcagtttaa taattcaggt actgaatttt attgcttgct
2161 aattgtgcct ttccgttgct aaattaagaa atgctatgtg tactgtgatg taaaaataag
2221 acattaactt tatcttaagt tacatataat caagcaaata ttttaaaaaa tgtatgtcag
2281 ggtgacaggc ataaaagtaa attaccctta actctttagc ctttatttag aaagaaatgt
2341 ggaatgggct aaactttctc accaatttat tagaaagcta aatggataaa tacttccctt
2401 tttgtagata tttttctgtg cattgtaagt tataggagca ggacatattt tttgtacatt
2461 gtcttgattg tttatactgc aggtaggtat ttccagtgaa tggaaacgtt gaaatttata
2521 gatgggacaa tgcacatact tcatatgtaa acaaagcatt tttctaaata atttggaaag
2581 gattggattt agcaccgtta acttttaata cccatttatt ggctatttaa ggtaaattat
2641 aaaacctaaa attagtatca gtattttaga tcctattatt ttttcaactt tctattattt
2701 tcacagtgga aaatttgcgt atagtattaa actattcttt tttctgtcta cctttatatt
2761 ttgaagtgtg gttgtactta cgttaatagt aagtgtattt gtagaaagtt tttcataaag
2821 aagagattaa ctttccatat aaataaatac caggtatgaa attactgatt ttagtgcaat
2881 atctgtatga ttatccagaa ctatcacttc agatgtttct attttgggca ccataactat
2941 ttgagctcat atttttataa ttctgattga gaatttaggg gcatggtaat ttttaccaaa
3001 actgaagctg gtaattttaa gtaaagcaac taaatttacc ctttacttat tagttaaaag
3061 gaaaccaagg catgtaggaa aatattggta cgttggaaaa tgtgaaaaga gctttacttt
3121 caaaatgtat gtttaatgaa ttgaatttta gggaccgttt cccataattt gggcctatgc
3181 tatcctgttg atttttatgt ctagcttaaa aggtatttga aaatgttcca tttgtgtttt
3241 attattttct gtcctatgac agttctatgc taaatgtatt ttaaaataaa agccaaattg
3301 aagattaaaa aaaaaaaaaa aaa
//