LOCUS BC063815 3077 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens Notch homolog 4 (Drosophila), mRNA (cDNA clone
IMAGE:6180034), complete cds.
ACCESSION BC063815
VERSION BC063815.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3077)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3077)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: b Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27894369
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3077
/db_xref="H-InvDB:HIT000261193_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6180034"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3077
/gene="NOTCH4"
/gene_synonym="INT3"
/gene_synonym="NOTCH3"
/db_xref="GeneID:4855"
/db_xref="MIM:164951"
CDS 130..2073
/gene="NOTCH4"
/gene_synonym="INT3"
/gene_synonym="NOTCH3"
/codon_start=1
/product="NOTCH4 protein"
/protein_id="AAH63815.1"
/db_xref="GeneID:4855"
/db_xref="MIM:164951"
/translation="MQPPSLLLLLLLLLLLCVSVVRPRGLLCGSFPEPCANGGTCLSL
SLGQGTCQCAPGFLGETCQFPDPCQNAQLCQNGGSCQALLPAPLGLPSSPSPLTPSFL
CTCLPGFTGERCQAKLEDPCPPSFCSKRGRCHIQASGRPQCSCMPGWTGEQCQLRDFC
SANPCVNGGVCLATYPQIQCHCPPGFEGHACERDVNECFQDPGPCPKGTSCHNTLGSF
QCLCPVGQEGPRCELRAGPCPPRGCSNGGTCQLMPEKDSTFHLCLCPPGFIGPDCEVN
PDNCVSHQCQNGGTCQDGLDTYTCLCPETWTGWDCSEDVDECETQGPPHCRNGGTCQN
SAGSFHCVCVSGWGGTSCEENLDDCIAATCAPGSTCIDRVGSFSCLCPPGRTGLLCHL
EDMCLSQPCHGDAQCSTNPLTGSTLCLCQPGYSGPTCHQDLDECLMAQQGPSPCEHGG
SCLNTPGSFNCLCPPGYTGSRCEADHNECLSQPCHPGSTCLDLLATFHCLCPPGLEGQ
LCEVETNECASAPCLNHADCHDLLNGFQCICLPGFSGTRCEEDIDECRSSPCANGGQC
QDQPGAFHCKCLPGFEGPRCQTEVDECLSDPCPVGASCLDLPGAFFCLCPSGFTGSQG
RHWKELAEYFIPFGLGQSSLVGV"
BASE COUNT 683 a 874 c 889 g 631 t
ORIGIN
1 cttgcagcag gccgaggagg aagaagaggg gcagtgggag cagaggaggt ggctcctgcc
61 ccagtgagag ctctgagggt ccctgcctga agagggacag ggaccggggc ttggagaagg
121 ggctgtggaa tgcagccccc ttcactgctg ctgctgctgc tgctgctgct gctgctatgt
181 gtctcagtgg tcagacccag agggctgctg tgtgggagtt tcccagaacc ctgtgccaat
241 ggaggcacct gcctgagcct gtctctggga caagggacct gccagtgtgc ccctggcttc
301 ctgggtgaga cgtgccagtt tcctgacccc tgccagaacg cccagctctg ccaaaatgga
361 ggcagctgcc aagccctgct tcccgctccc ctagggctcc ccagctctcc ctctccattg
421 acacccagct tcttgtgcac ttgcctccct ggcttcactg gtgagagatg ccaggccaag
481 cttgaagacc cttgtcctcc ctccttctgt tccaaaaggg gccgctgcca catccaggcc
541 tcgggccgcc cacagtgctc ctgcatgcct ggatggacag gtgagcagtg ccagcttcgg
601 gacttctgtt cagccaaccc atgtgttaat ggaggggtgt gtctggccac atacccccag
661 atccagtgcc actgcccacc gggcttcgag ggccatgcct gtgaacgtga tgtcaacgag
721 tgcttccagg acccaggacc ctgccccaaa ggcacctcct gccataacac cctgggctcc
781 ttccagtgcc tctgccctgt ggggcaggag ggtccacgtt gtgagctgcg ggcaggaccc
841 tgccctccta ggggctgttc gaatgggggc acctgccagc tgatgccaga gaaagactcc
901 acctttcacc tctgcctctg tcccccaggt ttcataggcc cagactgtga ggtgaatcca
961 gacaactgtg tcagccacca gtgtcagaat gggggcactt gccaggatgg gctggacacc
1021 tacacctgcc tctgcccaga aacctggaca ggctgggact gctccgaaga tgtggatgag
1081 tgtgagaccc agggtccccc tcactgcaga aacgggggca cctgccagaa ctctgctggt
1141 agctttcact gcgtgtgtgt gagtggctgg ggcggcacaa gctgtgagga gaacctggat
1201 gactgtattg ctgccacctg tgccccggga tccacctgca ttgaccgggt gggctctttc
1261 tcctgcctct gcccacctgg acgcacagga ctcctgtgcc acttggaaga catgtgtctg
1321 agccagccgt gccatgggga tgcccaatgc agcaccaacc ccctcacagg ctccacactc
1381 tgcctgtgtc agcctggcta ttcggggccc acctgccacc aggacctgga cgagtgtctg
1441 atggcccagc aaggcccaag tccctgtgaa catggcggtt cctgcctcaa cactcctggc
1501 tccttcaact gcctctgtcc acctggctac acaggctccc gttgtgaggc tgatcacaat
1561 gagtgcctct cccagccctg ccacccagga agcacctgtc tggacctact tgccaccttc
1621 cactgcctct gcccgccagg cttagaaggg cagctctgtg aggtggagac caacgagtgt
1681 gcctcagctc cctgcctgaa ccacgcggat tgccatgacc tgctcaacgg cttccagtgc
1741 atctgcctgc ctggattctc cggcacccga tgtgaggagg atatcgatga gtgcagaagc
1801 tctccctgtg ccaatggtgg gcagtgccag gaccagcctg gagccttcca ctgcaagtgt
1861 ctcccaggct ttgaagggcc acgctgtcaa acagaggtgg atgagtgcct gagtgaccca
1921 tgtcccgttg gagccagctg ccttgatctt ccaggagcct tcttttgcct ctgcccctct
1981 ggtttcacag gttcacaggg gaggcactgg aaagaactgg cagaatattt tattccattt
2041 gggttggggc agagttcatt ggtgggtgtt tgatggttgg gatgtgagaa tagaatgaga
2101 atggtatcct ttaaagttat ttagtgtaaa acctgcacaa ttgtacaacc atggggacaa
2161 gggcaggggt taccgtaggg cccacatggg cccagtgtaa atggtgtgat tgcggcttgg
2221 gagcagagga cggggctcaa agaaaaggca ttcacttgct tatttagcaa gcacttacca
2281 actgcctact atgccagata cggaggcaaa tctgagtaag acagttgcca tcttcatgtg
2341 actttaagtc taatacagag agaccaacaa gtctcctgtt gatcatagcc cacagaggtg
2401 ctctgagaga aaaacgtgca ggatattaca agagcacaga ggaccagcca acccagacta
2461 aaaatggagg aggtgatggc tgagatgagt cttgaaagat aagcagaggc tgggcgtggt
2521 ggctcacgcc tatagtccca gcacttcggg aagccgaggc gggtggatca cccgagatta
2581 ggagttcgag atcagcctgg ccaacatggt gaaacctcgt ctctattaaa aatacaaatt
2641 acactttggg aggccgaggc gggtggatca tgaggtcagg agatcgacac tatcctggct
2701 aacacggtga aaccccatct caactaaaaa tacaaaaaaa taactgggcg tggtggcggg
2761 cgcctatagt cccagctact ccagaggctg aggcaggaga atggcgtgaa cccgggaggc
2821 ggagcttgca gtgagctgag atcacgccac tgcactccag cctgggtggc agagtaagac
2881 tccacctcaa aaaaaaaaaa aaatacaaaa attagccagg cgtggtggcg ggcgcctgca
2941 atcccagcta ttggggaggc tgaggcaaga gaatcgcttg aacctgggaa gcagtggttg
3001 cagtgagctg agatcactcc actgcactcc agcctgggtg acagagcaag attccatctc
3061 aaaaaaaaaa aaaaaaa
//