LOCUS BC063795 2234 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens estrogen-related receptor alpha, mRNA (cDNA clone
MGC:70614 IMAGE:6527166), complete cds.
ACCESSION BC063795
VERSION BC063795.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2234)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2234)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: l Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18860919.
FEATURES Location/Qualifiers
source 1..2234
/db_xref="H-InvDB:HIT000261181"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70614 IMAGE:6527166"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2234
/gene="ESRRA"
/gene_synonym="ERR1"
/gene_synonym="ERRa"
/gene_synonym="ERRalpha"
/gene_synonym="NR3B1"
/db_xref="GeneID:2101"
/db_xref="HGNC:HGNC:3471"
/db_xref="MIM:601998"
CDS 172..1443
/gene="ESRRA"
/gene_synonym="ERR1"
/gene_synonym="ERRa"
/gene_synonym="ERRalpha"
/gene_synonym="NR3B1"
/codon_start=1
/product="estrogen-related receptor alpha"
/protein_id="AAH63795.2"
/db_xref="GeneID:2101"
/db_xref="HGNC:HGNC:3471"
/db_xref="MIM:601998"
/translation="MSSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVALAPGPAPT
RCLPGHKEEEDGEGAGPGEQGGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAF
FKRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGVRLDRVRGGRQK
YKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAPVNALVSHLLVVEPEKLYAMPDPAGP
DGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQR
SLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL
ANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTA
GKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD"
BASE COUNT 419 a 663 c 756 g 396 t
ORIGIN
1 aagcagccgg cggcgccgcc gagtgagggg acgcggcgcg gtggggcggc gcggcccgag
61 gaggcggcgg aggaggggcc gcccgcggcc cccggctcac tccggcactc cgggccgctc
121 ggcccccatg cctgcccgac cgcgctgccg gagccccagg tgaccagcgc catgtccagc
181 caggtggtgg gcattgagcc tctctacatc aaggcagagc cggccagccc tgacagtcca
241 aagggttcct cggagacaga gaccgagcct cctgtggccc tggcccctgg tccagctccc
301 actcgctgcc tcccaggcca caaggaagag gaggatgggg agggggctgg gcctggcgag
361 cagggcggtg ggaagctggt gctcagctcc ctgcccaagc gcctctgcct ggtctgtggg
421 gacgtggcct ccggctacca ctatggtgtg gcatcctgtg aggcctgcaa agccttcttc
481 aagaggacca tccaggggag catcgagtac agctgtccgg cctccaacga gtgtgagatc
541 accaagcgga gacgcaaggc ctgccaggcc tgccgcttca ccaagtgcct gcgggtgggc
601 atgctcaagg agggagtgcg cctggaccgc gtccggggtg ggcggcagaa gtacaagcgg
661 cggccggagg tggacccact gcccttcccg ggccccttcc ctgctgggcc cctggcagtc
721 gctggaggcc cccggaagac agcagcccca gtgaatgcac tggtgtctca tctgctggtg
781 gttgagcctg agaagctcta tgccatgcct gaccccgcag gccctgatgg gcacctccca
841 gccgtggcta ccctctgtga cctctttgac cgagagattg tggtcaccat cagctgggcc
901 aagagcatcc caggcttctc atcgctgtcg ctgtctgacc agatgtcagt actgcagagc
961 gtgtggatgg aggtgctggt gctgggtgtg gcccagcgct cactgccact gcaggatgag
1021 ctggccttcg ctgaggactt agtcctggat gaagaggggg cacgggcagc tggcctgggg
1081 gaactggggg ctgccctgct gcaactagtg cggcggctgc aggccctgcg gctggagcga
1141 gaggagtatg ttctactaaa ggccttggcc cttgccaatt cagactctgt gcacatcgaa
1201 gatgccgagg ctgtggagca gctgcgagaa gctctgcacg aggccctgct ggagtatgaa
1261 gccggccggg ctggccccgg agggggtgct gagcggcggc gggcgggcag gctgctgctc
1321 acgctaccgc tcctccgcca gacagcgggc aaagtgctgg cccatttcta tggggtgaag
1381 ctggagggca aggtgcccat gcacaagctg ttcttggaga tgctcgaggc catgatggac
1441 tgaggcaagg ggtgggactg gtgggggttc tggcaggacc tgcctagcat ggggtcagcc
1501 ccaagggctg gggcggagct ggggtctggg cagtgccaca gcctgctggc agggccaggg
1561 caatgccatc agcccctggg aacaggcccc acgccctctc ctccccctcc tagggggtgt
1621 cagaagctgg gaacgtgtgt ccaggctctg ggcacagtgc tgccccttgc aagccataac
1681 gtgcccccag agtgtagggg gccttgcgga agccataggg ggctgcacgg gatgcgtggg
1741 aggcagaaac ctatctcagg gagggaaggg gatggaggcc agagtctccc agtgggtgat
1801 gcttttgctg ctgcttaatc ctaccccctc ttcaaagcag agtgggactt ggagagcaaa
1861 ggcccatgcc cccttcgctc ctcctctcat catttgcatt gggcattagt gtcccccctt
1921 gaagcaataa ctccaagcag actccagccc ctggacccct ggggtggcca gggcttcccc
1981 atcagctccc aacgagcctc ctcagggggt aggagagcac tgcctctatg ccctgcagag
2041 caataacact atatttattt ttgggtttgg ccagggaggc gcagggacat ggggcaagcc
2101 agggcccaga gcccttggct gtacagagac tctattttaa tgtatatttg ctgcaaagag
2161 aaaccgcttt tggttttaaa cctttaatga gaaaaaaata tataataccg agctcaaaaa
2221 aaaaaaaaaa aaaa
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