LOCUS BC063693 1518 bp mRNA linear HUM 30-JUN-2004
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 8, mRNA
(cDNA clone IMAGE:4443191), partial cds.
ACCESSION BC063693
VERSION BC063693.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1518)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1518)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: j Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1518
/db_xref="H-InvDB:HIT000261146"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4443191"
/tissue_type="Liver, adenocarcinoma"
/clone_lib="NIH_MGC_90"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1518
/gene="CHD8"
/gene_synonym="HELSNF1"
/gene_synonym="KIAA1564"
/db_xref="GeneID:57680"
CDS <1..1375
/gene="CHD8"
/gene_synonym="HELSNF1"
/gene_synonym="KIAA1564"
/codon_start=2
/product="CHD8 protein"
/protein_id="AAH63693.1"
/db_xref="GeneID:57680"
/translation="MSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVC
QAVLSGKWPSSRRSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAE
EEASAVSTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHKLMANGVMGDGHPLFH
KKKGNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ
GHPEFAVDPRFLAYMEDRRKQKWQRCKKNNKAELNCLGMEPVQTANSRNGKKGHHTET
VFNRVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLSLHNTFQHSSSGLQSVS
SLGHSSATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHPHPHHHHHHHPGLRAPGY
PSSPVTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSERDFSLIDDPMMPANSD
SSEDADD"
BASE COUNT 423 a 361 c 407 g 327 t
ORIGIN
1 tatgtcccaa gatggattcc caaatgaaga tggagaacaa atgacccctg agcttctgct
61 actgcaggaa agacaaagag cctctgagtg gcccaaggat cgtgtcctga taaaccgtat
121 tgacctcgtc tgccaggctg tactctcagg gaagtggcct tctagccgta ggagccagga
181 aatggtaaca ggaggaattt tggggccagg caaccacttg ctagacagtc cctcattgac
241 tcctggagaa tatggtgact ctccagtccc cacaccacga agtagtagtg cagcttccat
301 ggcagaggag gaagcatctg cagtcagcac agcggcagcc cagttcacca aacttcgccg
361 aggcatggat gaaaaggagt ttacagttca aatcaaagat gaggaaggat tgaagttaac
421 attccagaag cacaagttga tggcgaatgg agtaatggga gatggacatc cactgtttca
481 taagaagaag gggaacagaa agaagctagt agagctggag gtggagtgca tggaagagcc
541 taatcacctt gatgtggacc tggagacccg gatccctgtc atcaataagg tggatggtac
601 tttgctggtg ggtgaggatg cccctcgccg ggctgaactg gagatgtggt tacagggtca
661 tccagagttt gctgttgatc cccgatttct agcgtatatg gaggatcgca gaaaacagaa
721 gtggcaaaga tgtaaaaaaa ataataaggc agaattgaac tgtttgggaa tggaaccagt
781 acagacagct aactctagaa atgggaaaaa gggtcatcac actgaaacgg tgttcaaccg
841 ggttttgcca gggcctattg caccagagag cagcaagaag cgggcccgta ggatgcgacc
901 agacctttct aagatgatgg ccctcatgca gggtggaagc actgggtctc tatctctgca
961 taacacgttc caacacagca gtagtggcct acagtctgtg tcatctttgg gtcacagcag
1021 tgccacttct gcatctttgc cttttatgcc atttgtgatg ggtggtgcac catcatcccc
1081 tcatgtagac tccagcacca tgcttcatca ccaccaccac cacccccacc cccaccatca
1141 ccaccatcac catccaggct tgagagcccc tggctacccc tcttcaccag tgactaccgc
1201 ctctggtact accttgcggt tgccaccact gcaacctgag gaggatgacg atgaggatga
1261 agaagatgat gatgacttat ctcagggcta tgatagctca gaaagggact tctcactcat
1321 tgatgatcct atgatgccag ctaactcaga ctccagtgaa gatgctgatg actgaagccc
1381 cagcatgggc cccattgctt gggcggctgc tgtattttca tttactctgg cccttggact
1441 atggaaacgt gggaggggca ggggagatgt ggggaagtcc aggactccag gaggtgaaaa
1501 ggaaaaaaaa aaaaaaaa
//