LOCUS BC063609 2266 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, epsilon, mRNA (cDNA clone
IMAGE:4941132), partial cds.
ACCESSION BC063609
VERSION BC063609.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2266)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2266)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: o Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..2266
/db_xref="H-InvDB:HIT000261063"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4941132"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2266
/gene="NFKBIE"
/gene_synonym="IKBE"
/db_xref="GeneID:4794"
/db_xref="MIM:604548"
CDS <1..1274
/gene="NFKBIE"
/gene_synonym="IKBE"
/codon_start=3
/product="NFKBIE protein"
/protein_id="AAH63609.1"
/db_xref="GeneID:4794"
/db_xref="MIM:604548"
/translation="WPALRTLSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAARR
SLEPDPAQTGPRPARAAGMSEARKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGP
SDGSPQPCTHPPGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAEDPAPRLP
LPHVGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQEVLDIQNNLYQ
TALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEP
GRGTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLA
VETQERGLVQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVE
DETPQDLTEESLVLLPFDDLKISGKLLLCTD"
misc_feature 738..1139
/gene="NFKBIE"
/gene_synonym="IKBE"
/note="ANK; Region: ankyrin repeats"
/db_xref="CDD:cd00204"
BASE COUNT 469 a 675 c 699 g 423 t
ORIGIN
1 cctggccagc gctccgaacc ttgtcctcgc tgcgcgccgg cccctcggag ccccacagcc
61 cgggaaggag gccgccgcgg gccgggcgcc cgctctgcca agcggacccg caacccggaa
121 aggcggcgcg gcggagcctg gagccggatc ctgctcagac cgggccccgg ccggccagag
181 ccgcgggcat gtcggaggcg cggaaggggc cggacgaggc ggaggagagc cagtacgact
241 ctggcattga gtctctgcgc tctctgcgct ccctacccga gtccacctcg gctccagcct
301 ccgggccctc ggacggcagc ccccagccct gcacccatcc tccgggaccc gtcaaggaac
361 cacaggagaa ggaagacgcg gatggggagc gggctgattc cacctatggc tcctcctcgc
421 tcacctacac cctgtccttg ctggggggcc ccgaggctga ggacccggcc ccacgcctgc
481 cactccccca cgtgggggcg ctgagccctc agcagctgga agcactcact tacatctccg
541 aggacggaga cacgctggtc cacctggcag tgattcatga ggccccagcg gtgctgctct
601 gttgcctggc tttgctgccc caggaggtcc tggacattca aaataacctt taccagacag
661 cactccatct ggctgtacat ctggaccaac cgggcgcagt tcgggcactg gtgctgaagg
721 gggccagccg ggcactacag gaccggcatg gtgacacagc ccttcatgtg gcctgccagc
781 gccagcactt ggcctgtgcc cgctgcctgc tggaagggcg gccagagcca ggcagaggaa
841 catctcactc tctggacctc cagctgcaaa actggcaagg tctggcttgt ctccacattg
901 ccacccttca gaagaaccaa ccactcatgg aattgctgct tcggaatgga gctgacattg
961 atgtgcagga gggcaccagt ggtaagacag cgctgcacct ggctgtggaa acccaagagc
1021 ggggcctggt acagttcctg ctccaggctg gtgcccaggt agatgcccgc atgctgaacg
1081 ggtgcacacc cctgcacctg gcagctggcc ggggtctcat gggcatctca tccactctgt
1141 gcaaggcggg tgctgactcc ctgctgcgga atgtggagga tgagacgccc caggacctga
1201 ctgaggaatc ccttgtcctt ttgccctttg atgacctgaa gatctcaggg aaactgctgc
1261 tgtgtaccga ctgaagccag gcagggtctg ggatcctcag ggctccacct ctccatctgg
1321 aagccggagc cataactgct gcagtttggg cccaggctat gtgctcttct ggtgccctag
1381 ggactgctgt ggccagagcc tggggccagc cagtacagtc ctgagccgag gaggagggac
1441 tgcaagtgga agagagccag tctggaagga agagctttcc aggtggacag ggcttcttgg
1501 aagaccccca aagccccagg tatcctgggt gaagcctgtt tgcctctctt gaaaatggca
1561 ggtgctcttg ttttacccat gttgggtcag cctgaaactg ccaaccagta ggaagcatgg
1621 actctcctga gtgagaagag actgaaatag gagcaagcag aaccctgaga ggtgtcccat
1681 cttattgctg ttgaggaccc tgaaacaccg ttgtttaaag acttcacaca gaaggctctg
1741 aactgagcca ctggggaagg gaagtttcag taacatgaca ctaaaatggc agagacgtta
1801 aaaaaagttt ttcccttcta gagctgtttt gcgcgcatgc atgtctgtgt gcattggggc
1861 tttttagaca ggcctgccct gtgactttgt ggtagaggca gagagaagga aattgtcccc
1921 tgagcacggt agggccttgc tgggtggggt cagaggccag tagttccagg cctttctctg
1981 tgtccagcac agacccttgt ccttgctgtg gaaatgatga gggatggagg gacaagagga
2041 agaatgagag gacacacgcc ctggagccct caccactgcc ctgggggttg ccatctggag
2101 gagcctgggg ataagggtaa cccagggagg ctgggcacga gggagctgac tccacgtttt
2161 tccccccgtt cctcaccttc gagggccctg ctaggtcacc cctatgctgg catgaagagc
2221 atggggcaat aaaccagcac agtctctgac caaaaaaaaa aaaaaa
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