LOCUS BC063447 3569 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1, mRNA (cDNA clone MGC:71081
IMAGE:5500032), complete cds.
ACCESSION BC063447
VERSION BC063447.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3569)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3569)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 135 Row: p Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 67188444.
FEATURES Location/Qualifiers
source 1..3569
/db_xref="H-InvDB:HIT000260907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71081 IMAGE:5500032"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3569
/gene="CTDP1"
/gene_synonym="CCFDN"
/gene_synonym="FCP1"
/db_xref="GeneID:9150"
/db_xref="HGNC:HGNC:2498"
/db_xref="MIM:604927"
CDS 103..2706
/gene="CTDP1"
/gene_synonym="CCFDN"
/gene_synonym="FCP1"
/codon_start=1
/product="CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1"
/protein_id="AAH63447.1"
/db_xref="GeneID:9150"
/db_xref="HGNC:HGNC:2498"
/db_xref="MIM:604927"
/translation="MEVPAAGRVPAEGAPTAAVAEVRCPGPAPLRLLEWRVAAGAAVR
IGSVLAVFEAAASAQSAGASQSRVASGGCVRPARPERRLRSERAGVVRELCAQPGQVV
APGAVLVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELM
VSSEQAEQLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGRGE
PMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDE
CIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKKYVYFQGTGDMNAPPG
SRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATP
RDSPRPGKPDERDIWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDL
DFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRP
AAPSLPGEAEPGAHAPDKEPELGGQEEGERDGLCGLGNGCADRKEAETESQNSELSGV
TAGESLDQSMEEEEEEDTDEDDHLIYLEEILVRVHTDYYAKYDRYLNKEIEEAPDIRK
IVPELKSKVLADVAIIFSGLHPTNFPIEKTREHYHATALGAKILTRLVLSPDAPDRAT
HLIAARAGTEKVLQAQECGHLHVVNPDWLWSCLERWDKVEEQLFPLRDDHTKAQRENS
PAAFPDREGVPPTALFHPMPVLPKAQPGPEVRIYDSNTGKLIRTGARGPPAPSSSLPI
RQEPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPAGSGRSGHLRPARGARQ
GAGGPEATRGS"
BASE COUNT 755 a 1062 c 1173 g 579 t
ORIGIN
1 ggaactacag cgtcgccgcc tgggttgtgt cgccgcggta ggcgctgcgc tctgagcgca
61 gcgcaggccc cgtaccgacc gcccgcccgc cctctgtccg cgatggaggt gccggccgcg
121 ggtcgcgttc ctgccgaggg cgccccgacg gcggctgtgg ccgaggtgcg ctgcccgggg
181 cccgcgccgc tgcgcctgct ggagtggagg gtggcggcgg gcgcggccgt gcgcatcggc
241 tcggtgctgg ccgtgttcga ggccgccgcc tccgcgcagt ccgccggggc ctctcagtcc
301 cgtgtagcct ccgggggctg cgtgcgcccc gcgcggccgg aacgcaggct gaggtcggag
361 cgcgcgggcg tggtgcggga gctgtgcgcg cagccgggcc aggtggtcgc cccaggagcg
421 gttctggtga ggttggaagg atgcagccac ccggttgtca tgaaaggcct gtgtgctgaa
481 tgtggccaag acctcaccca gttgcagagt aagaacggga agcagcaggt gccgctgtcc
541 acggcgaccg tgtccatggt gcacagcgtg ccggagttga tggtgagctc cgagcaagct
601 gaacagctgg gaagagaaga ccagcagcga ctgcaccgaa accggaagct ggtgctcatg
661 gtggacttgg accagacgtt gattcacaca accgagcagc actgtcagca gatgtcgaat
721 aaaggcatct ttcacttcca gctgggccgg ggtgagccca tgctgcacac gcgcctgcgt
781 ccacactgca aggacttcct ggagaagatc gccaagctgt acgagctgca cgtcttcacc
841 ttcggcagcc ggctgtacgc acacaccatc gcaggctttt tagaccccga gaagaagctt
901 ttttctcacc gaatattatc aagggatgaa tgtattgacc cattttctaa aacgggaaac
961 cttagaaatc tctttccttg tggagactca atggtttgca ttattgatga tcgagaagat
1021 gtctggaagt ttgcccccaa tctgataact gtgaagaaat atgtatactt ccagggcacg
1081 ggtgatatga atgcgccccc tgggtcccga gaatctcaga cgagaaagaa agtaaatcat
1141 tctcgaggca ctgaggtctc agagccatct ccgcccgtga gagaccctga gggggtaacg
1201 caggcccctg gagtggagcc cagcaatggc ctggagaagc ctgcacggga gctgaacggc
1261 agcgaggccg ccaccccgcg ggactcaccc cgccccggga agccagacga gagggacatc
1321 tggccccctg cccaggcccc caccagcagc caagagctgg caggcgctcc tgagccccag
1381 ggatcctgtg cgcagggtgg ccgggtggca ccgggacagc ggcctgccca gggtgccacg
1441 ggcactgacc tggactttga cttatccagc gacagcgaga gcagcagtga gtccgagggc
1501 acgaagtcct cctcctccgc ctctgatggc gaaagcgagg ggaaaagagg ccggcagaag
1561 ccgaaggctg ccccagaggg agccggggcg ctggcacagg gcagttccct ggagccgggg
1621 cggcctgcag caccgagtct ccccggagag gccgagcctg gcgcgcatgc cccggacaag
1681 gagcctgagc tgggtgggca ggaggagggc gagcgggatg gcctctgcgg cctgggcaac
1741 ggctgtgccg acaggaagga ggcggagacc gagtcacaga acagcgagct gtcgggggtc
1801 actgcgggtg agtccctgga ccagagcatg gaggaggagg aggaggagga cacggatgag
1861 gatgaccacc tcatctacct ggaggagatc ctggtccgtg tacacactga ctactatgcc
1921 aagtatgacc gctacctcaa caaggagatc gaggaggcgc cggacatccg caagatcgtg
1981 ccggagctca agagcaaggt gctggcagac gtggccataa ttttcagtgg gctacacccg
2041 acaaacttcc cgatagagaa gacgcgggag cattaccacg ccacggcgct gggagcgaag
2101 atcctcactc ggctggtgct gagccccgac gcccctgaca gggccacgca cctgatcgcc
2161 gcgcgagctg gcacagagaa ggtgctgcag gcacaggagt gcggacacct gcacgtggtc
2221 aaccctgact ggctgtggag ctgcctggag cgctgggaca aggtggagga gcagctcttc
2281 ccgctcaggg acgatcacac caaggcacag agggagaaca gccctgcggc ctttcccgac
2341 cgggagggtg tgccccccac cgccttgttc cacccgatgc cggttcttcc caaggcccag
2401 cctggccccg aggttcggat ctacgactcc aacacgggga agctcatcag gacgggcgcc
2461 cgggggcccc cagcaccctc cagctcccta cccatccgcc aggagccctc ttccttcagg
2521 tggacgacat ccttggagaa ggcagcgacg acagcgacag cgagaagagg aggcctgagg
2581 agcaggagga ggagccccag ccccggaagc cagggacccg cagggagcgg acgctcgggg
2641 cacctgcgtc cagcgagagg agcgcggcag ggggccgggg gcccagaggc cacaagagga
2701 agctgaatga agaggacgcc gccagcgagt ccagcaggga gtccagcaac gaggacgagg
2761 gcagcagctc cgaggccgac gagatggcca aggcgctgga ggcggagctc aacgacctca
2821 tgtgagcgcg ggcagcgggc agggactgaa gcctgaccga cctccagcag cactcagacg
2881 tccccggacc agccctcagt ctcggtccac gctgctttct tcccaaagga catgtatatt
2941 tgcagagctc cacatacaga aacacattat tttgcagaaa taggtgtttt taagaagttt
3001 tactacagga atgtctactt ttgtaagtga caggtgttaa aggcccaggt gtgctgtgcc
3061 aaagagctca gcagaggctc acgtggccca ggctggtgcg cccgctgtct cggtaagggg
3121 cgggttggtg tgttttcccc ttgtgtacca gagcacattc cttaggggac ggctttgggg
3181 gtcccacgag acatggacta ggagtttaag caggacagtg tgcgtgcacg agctccgagc
3241 ccagcacaga catgcctgga acccccgccg cctgctgctc cctcctaggg aacccatttc
3301 cggggaacgc cgtgactgtc gggcagcctg gagcttcctg cagcctccta cgcagggtcc
3361 acgccacgtg gcctgggctg ccatcctgcc gtcctcccac tggcatcctg gcaagggggc
3421 gttgcttttc ctgggtggcc ttttatgtct tggagacacc tgatgtaaag tttctgtaaa
3481 tctatttcat atctgaccca ccaaacagat ttctctttaa taaaaatcct ttttgtaaaa
3541 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//